Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNA5SP402-201ENST00000517148 110 ntBASIC2.59□□□□□ -1.99
USHBP1Q8N6Y0 RNA5SP170-201ENST00000517150 101 ntBASIC2.59□□□□□ -1.99
USHBP1Q8N6Y0 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.59□□□□□ -1.99
USHBP1Q8N6Y0 AP006437.1-201ENST00000641440 3685 ntBASIC2.59□□□□□ -2
USHBP1Q8N6Y0 RNU1-58P-201ENST00000362413 163 ntBASIC2.58□□□□□ -2
USHBP1Q8N6Y0 Y_RNA.43-201ENST00000362670 111 ntBASIC2.58□□□□□ -2
USHBP1Q8N6Y0 SNORD115-3-201ENST00000363100 82 ntBASIC2.58□□□□□ -2
USHBP1Q8N6Y0 Y_RNA.309-201ENST00000365046 111 ntBASIC2.58□□□□□ -2
USHBP1Q8N6Y0 Y_RNA.338-201ENST00000365320 114 ntBASIC2.58□□□□□ -2
USHBP1Q8N6Y0 RNU6-440P-201ENST00000390882 105 ntBASIC2.58□□□□□ -2
USHBP1Q8N6Y0 AC019129.1-201ENST00000403786 261 ntBASIC2.58□□□□□ -2
USHBP1Q8N6Y0 AC108667.1-201ENST00000428618 249 ntBASIC2.58□□□□□ -2
USHBP1Q8N6Y0 AL606517.2-201ENST00000442855 241 ntBASIC2.58□□□□□ -2
USHBP1Q8N6Y0 COX6CP6-201ENST00000490840 228 ntBASIC2.58□□□□□ -2
USHBP1Q8N6Y0 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.58□□□□□ -2
USHBP1Q8N6Y0 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.58□□□□□ -2
USHBP1Q8N6Y0 MIR8081-201ENST00000611533 95 ntBASIC2.58□□□□□ -2
USHBP1Q8N6Y0 ZNF355P-201ENST00000427301 3216 ntBASIC2.58□□□□□ -2
USHBP1Q8N6Y0 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
USHBP1Q8N6Y0 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
USHBP1Q8N6Y0 RNA5SP109-201ENST00000391010 116 ntBASIC2.57□□□□□ -2
USHBP1Q8N6Y0 HMGN2P32-201ENST00000444648 269 ntBASIC2.57□□□□□ -2
USHBP1Q8N6Y0 RNU6-168P-201ENST00000516189 101 ntBASIC2.57□□□□□ -2
USHBP1Q8N6Y0 Y_RNA.676-201ENST00000516393 96 ntBASIC2.57□□□□□ -2
USHBP1Q8N6Y0 RNU7-70P-201ENST00000516941 66 ntBASIC2.57□□□□□ -2
USHBP1Q8N6Y0 AC007012.1-201ENST00000567192 175 ntBASIC2.57□□□□□ -2
USHBP1Q8N6Y0 SNORA28-201ENST00000606769 126 ntBASIC2.57□□□□□ -2
USHBP1Q8N6Y0 ZNF720P1-201ENST00000562403 1939 ntBASIC2.57□□□□□ -2
USHBP1Q8N6Y0 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.57□□□□□ -2
USHBP1Q8N6Y0 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.56□□□□□ -2
USHBP1Q8N6Y0 RNU6-1019P-201ENST00000364424 107 ntBASIC2.56□□□□□ -2
USHBP1Q8N6Y0 Y_RNA.281-201ENST00000364774 94 ntBASIC2.56□□□□□ -2
USHBP1Q8N6Y0 MIR570-201ENST00000384917 97 ntBASIC2.56□□□□□ -2
USHBP1Q8N6Y0 RNA5SP89-201ENST00000410300 108 ntBASIC2.56□□□□□ -2
USHBP1Q8N6Y0 AC087499.4-201ENST00000448505 178 ntBASIC2.56□□□□□ -2
USHBP1Q8N6Y0 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.56□□□□□ -2
USHBP1Q8N6Y0 RPS29P11-201ENST00000496507 171 ntBASIC2.56□□□□□ -2
USHBP1Q8N6Y0 RNU6-240P-201ENST00000516098 97 ntBASIC2.56□□□□□ -2
USHBP1Q8N6Y0 SNORA31.11-201ENST00000516528 139 ntBASIC2.56□□□□□ -2
USHBP1Q8N6Y0 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.56□□□□□ -2
USHBP1Q8N6Y0 AC084364.2-201ENST00000546924 395 ntBASIC2.56□□□□□ -2
USHBP1Q8N6Y0 MIR3126-201ENST00000577443 74 ntBASIC2.56□□□□□ -2
USHBP1Q8N6Y0 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.56□□□□□ -2
USHBP1Q8N6Y0 MIR8054-201ENST00000620877 86 ntBASIC2.56□□□□□ -2
USHBP1Q8N6Y0 AC022513.1-201ENST00000624512 117 ntBASIC2.56□□□□□ -2
USHBP1Q8N6Y0 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.56□□□□□ -2
USHBP1Q8N6Y0 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USHBP1Q8N6Y0 Y_RNA.116-201ENST00000363292 103 ntBASIC2.55□□□□□ -2
USHBP1Q8N6Y0 Y_RNA.164-201ENST00000363709 102 ntBASIC2.55□□□□□ -2
USHBP1Q8N6Y0 MIR9-3-201ENST00000385084 90 ntBASIC2.55□□□□□ -2
USHBP1Q8N6Y0 AL031737.1-201ENST00000450125 223 ntBASIC2.55□□□□□ -2
USHBP1Q8N6Y0 SNORD14A-201ENST00000606526 91 ntBASIC2.55□□□□□ -2
USHBP1Q8N6Y0 AC022202.1-201ENST00000613515 211 ntBASIC2.55□□□□□ -2
USHBP1Q8N6Y0 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.55□□□□□ -2
USHBP1Q8N6Y0 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USHBP1Q8N6Y0 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.54□□□□□ -2
USHBP1Q8N6Y0 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.54□□□□□ -2
USHBP1Q8N6Y0 ICE2P2-201ENST00000483823 2787 ntBASIC2.54□□□□□ -2
USHBP1Q8N6Y0 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.54□□□□□ -2
USHBP1Q8N6Y0 SNORD13-201ENST00000459299 104 ntBASIC2.54□□□□□ -2
USHBP1Q8N6Y0 RNA5SP182-201ENST00000516064 82 ntBASIC2.54□□□□□ -2
USHBP1Q8N6Y0 SNORD36C-201ENST00000516733 66 ntBASIC2.54□□□□□ -2
USHBP1Q8N6Y0 AP003484.1-201ENST00000530974 250 ntBASIC2.54□□□□□ -2
USHBP1Q8N6Y0 AL049779.4-201ENST00000604500 156 ntBASIC2.54□□□□□ -2
USHBP1Q8N6Y0 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
USHBP1Q8N6Y0 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USHBP1Q8N6Y0 RNU6-349P-201ENST00000362402 107 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 RNU6-1255P-201ENST00000363434 112 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 Y_RNA.198-201ENST00000364013 98 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 RNU1-133P-201ENST00000364867 167 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 RNU6-690P-201ENST00000365242 106 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 Y_RNA.440-201ENST00000384120 114 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 RNU1-52P-201ENST00000384190 164 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 RNU6-163P-201ENST00000384396 106 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 RNU6-938P-201ENST00000411285 103 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 AC069257.2-201ENST00000441819 155 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 STAG3L5P-204ENST00000443759 179 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 RNU7-80P-201ENST00000459562 61 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 AC114811.1-201ENST00000507207 168 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 SNORA18.7-201ENST00000516910 131 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 MIR4778-201ENST00000577635 80 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 AC069114.2-201ENST00000604699 304 ntBASIC2.53□□□□□ -2
USHBP1Q8N6Y0 MIRLET7G-201ENST00000362280 84 ntBASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 Y_RNA.4-201ENST00000362333 112 ntBASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 RNA5SP393-201ENST00000363423 117 ntBASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 RNU6-457P-201ENST00000363999 107 ntBASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 RNU6-1107P-201ENST00000364817 104 ntBASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 Y_RNA.351-201ENST00000365436 96 ntBASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 SNORD38C-201ENST00000384381 69 ntBASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 MIR759-201ENST00000390224 91 ntBASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 RN7SKP200-201ENST00000410564 320 ntBASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 BX510359.4-201ENST00000423750 193 ntBASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 AC015726.2-201ENST00000620112 122 ntBASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 AC027279.3-201ENST00000625055 122 ntBASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
USHBP1Q8N6Y0 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
USHBP1Q8N6Y0 Y_RNA.85-201ENST00000363014 111 ntBASIC2.51□□□□□ -2.01
USHBP1Q8N6Y0 RNY4P6-201ENST00000363667 96 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms