Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNU6-1084P-201ENST00000362498 107 ntBASIC1.94□□□□□ -2.1
VPS53Q5VIR6 RNU6-199P-201ENST00000362954 107 ntBASIC1.94□□□□□ -2.1
VPS53Q5VIR6 RNU6-704P-201ENST00000364162 103 ntBASIC1.94□□□□□ -2.1
VPS53Q5VIR6 SNORA25.7-201ENST00000364375 127 ntBASIC1.94□□□□□ -2.1
VPS53Q5VIR6 RNU6-439P-201ENST00000384188 106 ntBASIC1.94□□□□□ -2.1
VPS53Q5VIR6 MIR802-201ENST00000390235 94 ntBASIC1.94□□□□□ -2.1
VPS53Q5VIR6 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
VPS53Q5VIR6 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.94□□□□□ -2.1
VPS53Q5VIR6 RNU6-406P-201ENST00000516470 107 ntBASIC1.94□□□□□ -2.1
VPS53Q5VIR6 MIR548X2-201ENST00000579776 100 ntBASIC1.94□□□□□ -2.1
VPS53Q5VIR6 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
VPS53Q5VIR6 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
VPS53Q5VIR6 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.93□□□□□ -2.1
VPS53Q5VIR6 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
VPS53Q5VIR6 RNU6-888P-201ENST00000363010 101 ntBASIC1.93□□□□□ -2.1
VPS53Q5VIR6 RNU6-424P-201ENST00000384367 105 ntBASIC1.93□□□□□ -2.1
VPS53Q5VIR6 MIR569-201ENST00000385228 96 ntBASIC1.93□□□□□ -2.1
VPS53Q5VIR6 SNORD37.2-201ENST00000391075 66 ntBASIC1.93□□□□□ -2.1
VPS53Q5VIR6 MIR1267-201ENST00000408723 78 ntBASIC1.93□□□□□ -2.1
VPS53Q5VIR6 SNRPGP14-201ENST00000435400 219 ntBASIC1.93□□□□□ -2.1
VPS53Q5VIR6 AC112693.2-201ENST00000556538 232 ntBASIC1.93□□□□□ -2.1
VPS53Q5VIR6 MIR4769-201ENST00000584126 77 ntBASIC1.93□□□□□ -2.1
VPS53Q5VIR6 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
VPS53Q5VIR6 AL442644.1-201ENST00000454390 3105 ntBASIC1.93□□□□□ -2.1
VPS53Q5VIR6 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
VPS53Q5VIR6 MIR424-201ENST00000362227 98 ntBASIC1.92□□□□□ -2.1
VPS53Q5VIR6 RNU6-818P-201ENST00000364837 108 ntBASIC1.92□□□□□ -2.1
VPS53Q5VIR6 Y_RNA.568-201ENST00000384742 113 ntBASIC1.92□□□□□ -2.1
VPS53Q5VIR6 MIR513C-201ENST00000401352 84 ntBASIC1.92□□□□□ -2.1
VPS53Q5VIR6 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.92□□□□□ -2.1
VPS53Q5VIR6 CALM2P4-201ENST00000430810 426 ntBASIC1.92□□□□□ -2.1
VPS53Q5VIR6 SNRPGP13-201ENST00000442212 177 ntBASIC1.92□□□□□ -2.1
VPS53Q5VIR6 TMSB4XP3-201ENST00000445144 114 ntBASIC1.92□□□□□ -2.1
VPS53Q5VIR6 RNU7-34P-201ENST00000459394 64 ntBASIC1.92□□□□□ -2.1
VPS53Q5VIR6 AC090142.3-201ENST00000519012 385 ntBASIC1.92□□□□□ -2.1
VPS53Q5VIR6 AC007751.1-201ENST00000529260 376 ntBASIC1.92□□□□□ -2.1
VPS53Q5VIR6 MIR3910-1-201ENST00000580936 111 ntBASIC1.92□□□□□ -2.1
VPS53Q5VIR6 AL365205.2-201ENST00000594586 68 ntBASIC1.92□□□□□ -2.1
VPS53Q5VIR6 AP001485.1-201ENST00000604799 199 ntBASIC1.92□□□□□ -2.1
VPS53Q5VIR6 AL513423.1-201ENST00000621695 132 ntBASIC1.92□□□□□ -2.1
VPS53Q5VIR6 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.91□□□□□ -2.1
VPS53Q5VIR6 Y_RNA.140-201ENST00000363474 103 ntBASIC1.91□□□□□ -2.1
VPS53Q5VIR6 RNU6-833P-201ENST00000363486 107 ntBASIC1.91□□□□□ -2.1
VPS53Q5VIR6 SNORD61-201ENST00000384252 73 ntBASIC1.91□□□□□ -2.1
VPS53Q5VIR6 Y_RNA.542-201ENST00000384641 111 ntBASIC1.91□□□□□ -2.1
VPS53Q5VIR6 U8.16-201ENST00000391279 133 ntBASIC1.91□□□□□ -2.1
VPS53Q5VIR6 MIR1323-201ENST00000408090 73 ntBASIC1.91□□□□□ -2.1
VPS53Q5VIR6 snoU13.9-201ENST00000458927 103 ntBASIC1.91□□□□□ -2.1
VPS53Q5VIR6 AC114811.1-201ENST00000507207 168 ntBASIC1.91□□□□□ -2.1
VPS53Q5VIR6 Y_RNA.666-201ENST00000516187 112 ntBASIC1.91□□□□□ -2.1
VPS53Q5VIR6 RNA5SP168-201ENST00000516642 112 ntBASIC1.91□□□□□ -2.1
VPS53Q5VIR6 AC021506.2-201ENST00000612354 169 ntBASIC1.91□□□□□ -2.1
VPS53Q5VIR6 RNU6-457P-201ENST00000363999 107 ntBASIC1.9□□□□□ -2.11
VPS53Q5VIR6 RNU6-268P-201ENST00000364174 107 ntBASIC1.9□□□□□ -2.11
VPS53Q5VIR6 RNA5SP363-201ENST00000365072 115 ntBASIC1.9□□□□□ -2.11
VPS53Q5VIR6 RNU6-163P-201ENST00000384396 106 ntBASIC1.9□□□□□ -2.11
VPS53Q5VIR6 JTBP1-201ENST00000441314 247 ntBASIC1.9□□□□□ -2.11
VPS53Q5VIR6 RNU7-197P-201ENST00000458836 62 ntBASIC1.9□□□□□ -2.11
VPS53Q5VIR6 AC099513.1-201ENST00000490423 301 ntBASIC1.9□□□□□ -2.11
VPS53Q5VIR6 MIR4303-201ENST00000581299 66 ntBASIC1.9□□□□□ -2.11
VPS53Q5VIR6 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.9□□□□□ -2.11
VPS53Q5VIR6 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
VPS53Q5VIR6 RNU6-1082P-201ENST00000364574 107 ntBASIC1.89□□□□□ -2.11
VPS53Q5VIR6 RNU6-1292P-201ENST00000383856 107 ntBASIC1.89□□□□□ -2.11
VPS53Q5VIR6 Y_RNA.497-201ENST00000384447 98 ntBASIC1.89□□□□□ -2.11
VPS53Q5VIR6 RNU6-588P-201ENST00000410281 105 ntBASIC1.89□□□□□ -2.11
VPS53Q5VIR6 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.89□□□□□ -2.11
VPS53Q5VIR6 RNU6-426P-201ENST00000516464 97 ntBASIC1.89□□□□□ -2.11
VPS53Q5VIR6 RNU6-1116P-201ENST00000517269 99 ntBASIC1.89□□□□□ -2.11
VPS53Q5VIR6 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
VPS53Q5VIR6 Y_RNA.251-201ENST00000364551 99 ntBASIC1.88□□□□□ -2.11
VPS53Q5VIR6 MIR548A2-201ENST00000384956 97 ntBASIC1.88□□□□□ -2.11
VPS53Q5VIR6 MIR518F-201ENST00000384973 87 ntBASIC1.88□□□□□ -2.11
VPS53Q5VIR6 MIR624-201ENST00000385217 97 ntBASIC1.88□□□□□ -2.11
VPS53Q5VIR6 MIR660-201ENST00000385235 97 ntBASIC1.88□□□□□ -2.11
VPS53Q5VIR6 MIR891A-201ENST00000401237 79 ntBASIC1.88□□□□□ -2.11
VPS53Q5VIR6 MIR548O-201ENST00000408583 114 ntBASIC1.88□□□□□ -2.11
VPS53Q5VIR6 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS53Q5VIR6 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.88□□□□□ -2.11
VPS53Q5VIR6 PGBD4P5-201ENST00000445958 426 ntBASIC1.88□□□□□ -2.11
VPS53Q5VIR6 RNU6-693P-201ENST00000516134 107 ntBASIC1.88□□□□□ -2.11
VPS53Q5VIR6 SNORA25.12-201ENST00000516202 82 ntBASIC1.88□□□□□ -2.11
VPS53Q5VIR6 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS53Q5VIR6 AL645939.4-201ENST00000604495 135 ntBASIC1.88□□□□□ -2.11
VPS53Q5VIR6 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS53Q5VIR6 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
VPS53Q5VIR6 SNORD38C-201ENST00000384381 69 ntBASIC1.87□□□□□ -2.11
VPS53Q5VIR6 RNU6-482P-201ENST00000391068 107 ntBASIC1.87□□□□□ -2.11
VPS53Q5VIR6 RNA5SP127-201ENST00000411051 133 ntBASIC1.87□□□□□ -2.11
VPS53Q5VIR6 AC092991.1-201ENST00000477176 376 ntBASIC1.87□□□□□ -2.11
VPS53Q5VIR6 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.87□□□□□ -2.11
VPS53Q5VIR6 RNU7-12P-201ENST00000516030 62 ntBASIC1.87□□□□□ -2.11
VPS53Q5VIR6 RNU6-830P-201ENST00000516353 107 ntBASIC1.87□□□□□ -2.11
VPS53Q5VIR6 RNU6-1270P-201ENST00000517128 108 ntBASIC1.87□□□□□ -2.11
VPS53Q5VIR6 MIR4285-201ENST00000581001 85 ntBASIC1.87□□□□□ -2.11
VPS53Q5VIR6 AC132825.6-201ENST00000638861 357 ntBASIC1.87□□□□□ -2.11
VPS53Q5VIR6 AC010332.2-201ENST00000613083 1904 ntBASIC1.86□□□□□ -2.11
VPS53Q5VIR6 RNU6-81P-201ENST00000365608 104 ntBASIC1.86□□□□□ -2.11
VPS53Q5VIR6 SNORA1-201ENST00000384107 130 ntBASIC1.86□□□□□ -2.11
VPS53Q5VIR6 AC131055.1-201ENST00000584626 316 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms