Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC022140.2-201ENST00000623500 188 ntBASIC0.68□□□□□ -2.3
HOXA9P31269 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.68□□□□□ -2.3
HOXA9P31269 MIR103A2-201ENST00000362154 78 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 RNU6-1272P-201ENST00000362776 107 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 RNU6-1205P-201ENST00000363625 106 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 SNORA33.2-201ENST00000365413 134 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 RNU6-326P-201ENST00000365480 107 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 RNU6-144P-201ENST00000383951 107 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 MIR15B-201ENST00000385045 98 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 RNU6-985P-201ENST00000410182 104 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.67□□□□□ -2.3
HOXA9P31269 AL392103.1-201ENST00000447000 198 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 MTND5P22-201ENST00000458380 195 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 AC091959.1-201ENST00000495857 238 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.67□□□□□ -2.3
HOXA9P31269 AP003733.2-201ENST00000529409 171 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.67□□□□□ -2.3
HOXA9P31269 MIR5692C2-201ENST00000577959 77 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 AL356055.1-201ENST00000602528 446 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 AL021707.8-201ENST00000609428 183 ntBASIC0.67□□□□□ -2.3
HOXA9P31269 Y_RNA.84-201ENST00000363011 104 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 RNA5SP325-201ENST00000363756 130 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 Y_RNA.202-201ENST00000364083 110 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 Y_RNA.217-201ENST00000364214 105 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 Y_RNA.330-201ENST00000365230 109 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 SNORD38C-201ENST00000384381 69 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 U8.17-201ENST00000391292 132 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 Y_RNA.641-201ENST00000459414 105 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.66□□□□□ -2.3
HOXA9P31269 RNU4-57P-201ENST00000515980 135 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 SNORA27.4-201ENST00000516650 95 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 RNU7-181P-201ENST00000517234 74 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 MIR4711-201ENST00000578274 70 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 AL008718.3-201ENST00000610217 321 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 SEPT14P17-201ENST00000617978 177 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 AC008133.2-201ENST00000624540 351 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 snoU18.1-201ENST00000629629 71 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 AL589743.1-201ENST00000551932 2712 ntBASIC0.66□□□□□ -2.3
HOXA9P31269 MIR200A-201ENST00000384875 90 ntBASIC0.65□□□□□ -2.31
HOXA9P31269 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.65□□□□□ -2.31
HOXA9P31269 MTND5P15-201ENST00000434246 349 ntBASIC0.65□□□□□ -2.31
HOXA9P31269 AC092628.1-201ENST00000436250 252 ntBASIC0.65□□□□□ -2.31
HOXA9P31269 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.65□□□□□ -2.31
HOXA9P31269 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.65□□□□□ -2.31
HOXA9P31269 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.65□□□□□ -2.31
HOXA9P31269 AC023827.1-201ENST00000569247 97 ntBASIC0.65□□□□□ -2.31
HOXA9P31269 AC131055.1-201ENST00000584626 316 ntBASIC0.65□□□□□ -2.31
HOXA9P31269 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.65□□□□□ -2.31
HOXA9P31269 SNORD114-23-201ENST00000363536 72 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 RNU4-10P-201ENST00000364383 140 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 RNU6-1227P-201ENST00000383981 107 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 RNA5SP193-201ENST00000410353 107 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 BTF3P11-201ENST00000426582 477 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 RNU6-1338P-201ENST00000516328 91 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 RNU7-149P-201ENST00000516739 59 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 AC036111.3-201ENST00000526389 112 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 AC109810.1-201ENST00000534066 224 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 AL049861.1-201ENST00000603130 150 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 AC106800.4-201ENST00000614905 153 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 uc_338.4-201ENST00000616635 176 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 MIR6516-201ENST00000630554 81 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 MIR4251-201ENST00000635819 61 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 AC010487.4-201ENST00000637027 61 ntBASIC0.64□□□□□ -2.31
HOXA9P31269 UBE2WP1-201ENST00000362030 340 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 SNORA25.1-201ENST00000362326 128 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 RNA5SP48-201ENST00000363969 126 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 RNU6-654P-201ENST00000364373 107 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 Y_RNA.494-201ENST00000384432 111 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 Y_RNA.547-201ENST00000384654 119 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 Y_RNA.572-201ENST00000384757 98 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 MIR193B-201ENST00000384907 83 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 MIR802-201ENST00000390235 94 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 SNORA53-201ENST00000391141 249 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 MIR942-201ENST00000401111 86 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 RNU6-1203P-201ENST00000410703 110 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 AC113618.1-201ENST00000416747 285 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 AC005534.2-201ENST00000431047 433 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 AL731563.1-201ENST00000442202 214 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 RNU2-13P-201ENST00000515909 113 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 RNU6-1143P-201ENST00000516125 104 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 RNU7-25P-201ENST00000516544 62 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 AC015726.2-201ENST00000620112 122 ntBASIC0.63□□□□□ -2.31
HOXA9P31269 Y_RNA.370-201ENST00000365589 108 ntBASIC0.62□□□□□ -2.31
HOXA9P31269 Y_RNA.512-201ENST00000384518 102 ntBASIC0.62□□□□□ -2.31
HOXA9P31269 RNA5SP496-201ENST00000391240 109 ntBASIC0.62□□□□□ -2.31
HOXA9P31269 RNU6-733P-201ENST00000410759 104 ntBASIC0.62□□□□□ -2.31
HOXA9P31269 SERF1AP1-201ENST00000514575 187 ntBASIC0.62□□□□□ -2.31
HOXA9P31269 MTCO2P24-201ENST00000515611 426 ntBASIC0.62□□□□□ -2.31
HOXA9P31269 Y_RNA.666-201ENST00000516187 112 ntBASIC0.62□□□□□ -2.31
HOXA9P31269 RNA5SP255-201ENST00000516370 107 ntBASIC0.62□□□□□ -2.31
HOXA9P31269 RNU11-2P-201ENST00000516898 142 ntBASIC0.62□□□□□ -2.31
HOXA9P31269 SCARNA24.2-201ENST00000516968 130 ntBASIC0.62□□□□□ -2.31
HOXA9P31269 AC007751.1-201ENST00000529260 376 ntBASIC0.62□□□□□ -2.31
HOXA9P31269 MIR548AO-201ENST00000579992 96 ntBASIC0.62□□□□□ -2.31
HOXA9P31269 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.62□□□□□ -2.31
HOXA9P31269 MIR4791-201ENST00000607666 84 ntBASIC0.62□□□□□ -2.31
HOXA9P31269 MTND1P7-201ENST00000632801 297 ntBASIC0.62□□□□□ -2.31
HOXA9P31269 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.62□□□□□ -2.31
HOXA9P31269 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
HOXA9P31269 Y_RNA.152-201ENST00000363578 100 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms