Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SNORA48.3-201ENST00000391081 134 ntBASIC2.41□□□□□ -2.02
COL6A1P12109 AL021397.1-201ENST00000451806 248 ntBASIC2.41□□□□□ -2.02
COL6A1P12109 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.41□□□□□ -2.02
COL6A1P12109 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.41□□□□□ -2.02
COL6A1P12109 AC108081.1-201ENST00000604358 221 ntBASIC2.41□□□□□ -2.02
COL6A1P12109 AC009831.4-201ENST00000620744 325 ntBASIC2.41□□□□□ -2.02
COL6A1P12109 RNU6-1084P-201ENST00000362498 107 ntBASIC2.4□□□□□ -2.03
COL6A1P12109 SNORA63.4-201ENST00000362763 126 ntBASIC2.4□□□□□ -2.03
COL6A1P12109 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
COL6A1P12109 SNORA17.3-201ENST00000391159 129 ntBASIC2.4□□□□□ -2.03
COL6A1P12109 RNA5SP212-201ENST00000391223 107 ntBASIC2.4□□□□□ -2.03
COL6A1P12109 Y_RNA.630-201ENST00000411370 108 ntBASIC2.4□□□□□ -2.03
COL6A1P12109 CYCTP-201ENST00000504253 315 ntBASIC2.4□□□□□ -2.03
COL6A1P12109 RN7SKP19-201ENST00000516016 252 ntBASIC2.4□□□□□ -2.03
COL6A1P12109 RNU6-589P-201ENST00000516485 107 ntBASIC2.4□□□□□ -2.03
COL6A1P12109 RNU6-113P-201ENST00000516653 101 ntBASIC2.4□□□□□ -2.03
COL6A1P12109 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.4□□□□□ -2.03
COL6A1P12109 snoU13.31-201ENST00000607291 104 ntBASIC2.4□□□□□ -2.03
COL6A1P12109 AL773524.1-201ENST00000614065 229 ntBASIC2.4□□□□□ -2.03
COL6A1P12109 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.4□□□□□ -2.03
COL6A1P12109 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.03
COL6A1P12109 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
COL6A1P12109 MIR6073-201ENST00000352083 89 ntBASIC2.39□□□□□ -2.03
COL6A1P12109 RNU6-508P-201ENST00000363231 103 ntBASIC2.39□□□□□ -2.03
COL6A1P12109 snoU2-30.1-201ENST00000365012 70 ntBASIC2.39□□□□□ -2.03
COL6A1P12109 SNORD116-21-201ENST00000384507 92 ntBASIC2.39□□□□□ -2.03
COL6A1P12109 MIR597-201ENST00000384968 97 ntBASIC2.39□□□□□ -2.03
COL6A1P12109 RNA5SP482-201ENST00000391269 118 ntBASIC2.39□□□□□ -2.03
COL6A1P12109 AC244636.1-201ENST00000421152 228 ntBASIC2.39□□□□□ -2.03
COL6A1P12109 AC245047.3-201ENST00000429428 127 ntBASIC2.39□□□□□ -2.03
COL6A1P12109 RNU7-28P-201ENST00000516759 62 ntBASIC2.39□□□□□ -2.03
COL6A1P12109 MIR3169-201ENST00000578032 83 ntBASIC2.39□□□□□ -2.03
COL6A1P12109 MIR4762-201ENST00000585261 75 ntBASIC2.39□□□□□ -2.03
COL6A1P12109 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.39□□□□□ -2.03
COL6A1P12109 AC025166.1-201ENST00000612411 163 ntBASIC2.39□□□□□ -2.03
COL6A1P12109 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.39□□□□□ -2.03
COL6A1P12109 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
COL6A1P12109 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
COL6A1P12109 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
COL6A1P12109 U8.5-201ENST00000364528 136 ntBASIC2.38□□□□□ -2.03
COL6A1P12109 Y_RNA.265-201ENST00000364677 108 ntBASIC2.38□□□□□ -2.03
COL6A1P12109 SNORA22-201ENST00000383907 134 ntBASIC2.38□□□□□ -2.03
COL6A1P12109 MIR548A2-201ENST00000384956 97 ntBASIC2.38□□□□□ -2.03
COL6A1P12109 SNORD77.3-201ENST00000391113 65 ntBASIC2.38□□□□□ -2.03
COL6A1P12109 MIR548O-201ENST00000408583 114 ntBASIC2.38□□□□□ -2.03
COL6A1P12109 RNA5SP181-201ENST00000410246 98 ntBASIC2.38□□□□□ -2.03
COL6A1P12109 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.38□□□□□ -2.03
COL6A1P12109 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.38□□□□□ -2.03
COL6A1P12109 Y_RNA.651-201ENST00000459380 103 ntBASIC2.38□□□□□ -2.03
COL6A1P12109 AC079804.2-201ENST00000490376 200 ntBASIC2.38□□□□□ -2.03
COL6A1P12109 RNA5SP236-201ENST00000516169 116 ntBASIC2.38□□□□□ -2.03
COL6A1P12109 RNU6-1149P-201ENST00000516810 97 ntBASIC2.38□□□□□ -2.03
COL6A1P12109 AC134878.1-201ENST00000619901 243 ntBASIC2.38□□□□□ -2.03
COL6A1P12109 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.38□□□□□ -2.03
COL6A1P12109 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
COL6A1P12109 RNU6-755P-201ENST00000364400 103 ntBASIC2.37□□□□□ -2.03
COL6A1P12109 RNU6-1164P-201ENST00000364428 107 ntBASIC2.37□□□□□ -2.03
COL6A1P12109 Y_RNA.410-201ENST00000383992 113 ntBASIC2.37□□□□□ -2.03
COL6A1P12109 Y_RNA.508-201ENST00000384502 114 ntBASIC2.37□□□□□ -2.03
COL6A1P12109 MIR518F-201ENST00000384973 87 ntBASIC2.37□□□□□ -2.03
COL6A1P12109 AC099677.2-201ENST00000436385 175 ntBASIC2.37□□□□□ -2.03
COL6A1P12109 RNU6-781P-201ENST00000516377 101 ntBASIC2.37□□□□□ -2.03
COL6A1P12109 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
COL6A1P12109 AC005786.1-201ENST00000588553 154 ntBASIC2.37□□□□□ -2.03
COL6A1P12109 AC006441.5-201ENST00000612680 209 ntBASIC2.37□□□□□ -2.03
COL6A1P12109 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.37□□□□□ -2.03
COL6A1P12109 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A1P12109 Y_RNA.336-201ENST00000365307 109 ntBASIC2.36□□□□□ -2.03
COL6A1P12109 MIR583-201ENST00000384846 75 ntBASIC2.36□□□□□ -2.03
COL6A1P12109 MIRLET7F2-201ENST00000385277 83 ntBASIC2.36□□□□□ -2.03
COL6A1P12109 MIR1283-2-201ENST00000408621 87 ntBASIC2.36□□□□□ -2.03
COL6A1P12109 RNA5SP489-201ENST00000410986 109 ntBASIC2.36□□□□□ -2.03
COL6A1P12109 HMGN2P32-201ENST00000444648 269 ntBASIC2.36□□□□□ -2.03
COL6A1P12109 Y_RNA.649-201ENST00000459077 103 ntBASIC2.36□□□□□ -2.03
COL6A1P12109 RNA5SP182-201ENST00000516064 82 ntBASIC2.36□□□□□ -2.03
COL6A1P12109 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.36□□□□□ -2.03
COL6A1P12109 MIR5197-201ENST00000583721 112 ntBASIC2.36□□□□□ -2.03
COL6A1P12109 AC069114.2-201ENST00000604699 304 ntBASIC2.36□□□□□ -2.03
COL6A1P12109 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A1P12109 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A1P12109 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
COL6A1P12109 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.35□□□□□ -2.03
COL6A1P12109 RNU6-1189P-201ENST00000383958 107 ntBASIC2.35□□□□□ -2.03
COL6A1P12109 RNU6-880P-201ENST00000384526 107 ntBASIC2.35□□□□□ -2.03
COL6A1P12109 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.35□□□□□ -2.03
COL6A1P12109 SNORD45.4-201ENST00000516629 73 ntBASIC2.35□□□□□ -2.03
COL6A1P12109 SNORA28-201ENST00000606769 126 ntBASIC2.35□□□□□ -2.03
COL6A1P12109 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.35□□□□□ -2.03
COL6A1P12109 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
COL6A1P12109 WWP1P1-201ENST00000466609 2769 ntBASIC2.35□□□□□ -2.03
COL6A1P12109 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.35□□□□□ -2.03
COL6A1P12109 AC080100.1-201ENST00000624239 5356 ntBASIC2.34□□□□□ -2.03
COL6A1P12109 MTND5P18-201ENST00000445624 1801 ntBASIC2.34□□□□□ -2.03
COL6A1P12109 Y_RNA.355-201ENST00000365462 98 ntBASIC2.34□□□□□ -2.03
COL6A1P12109 MIR1263-201ENST00000408324 86 ntBASIC2.34□□□□□ -2.03
COL6A1P12109 RNA5SP136-201ENST00000410906 107 ntBASIC2.34□□□□□ -2.03
COL6A1P12109 RNU6-321P-201ENST00000410912 106 ntBASIC2.34□□□□□ -2.03
COL6A1P12109 AC063976.4-201ENST00000421971 163 ntBASIC2.34□□□□□ -2.03
COL6A1P12109 AC069257.2-201ENST00000441819 155 ntBASIC2.34□□□□□ -2.03
COL6A1P12109 SCARNA15-202ENST00000516881 127 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms