Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RNU6-693P-201ENST00000516134 107 ntBASIC2.09□□□□□ -2.07
COL3A1P02461 RNA5SP236-201ENST00000516169 116 ntBASIC2.09□□□□□ -2.07
COL3A1P02461 SCARNA11.3-201ENST00000517276 130 ntBASIC2.09□□□□□ -2.07
COL3A1P02461 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.09□□□□□ -2.07
COL3A1P02461 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.09□□□□□ -2.07
COL3A1P02461 AL137067.1-201ENST00000615933 120 ntBASIC2.09□□□□□ -2.07
COL3A1P02461 UCA1.1-201ENST00000620952 75 ntBASIC2.09□□□□□ -2.07
COL3A1P02461 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.07
COL3A1P02461 Y_RNA.49-201ENST00000362714 112 ntBASIC2.08□□□□□ -2.08
COL3A1P02461 SNORD61-201ENST00000384252 73 ntBASIC2.08□□□□□ -2.08
COL3A1P02461 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
COL3A1P02461 RNU2-32P-201ENST00000411193 191 ntBASIC2.08□□□□□ -2.08
COL3A1P02461 AC123900.1-201ENST00000420390 96 ntBASIC2.08□□□□□ -2.08
COL3A1P02461 SNRPGP10-201ENST00000432323 225 ntBASIC2.08□□□□□ -2.08
COL3A1P02461 COX6CP6-201ENST00000490840 228 ntBASIC2.08□□□□□ -2.08
COL3A1P02461 AC093259.1-201ENST00000509755 300 ntBASIC2.08□□□□□ -2.08
COL3A1P02461 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.08□□□□□ -2.08
COL3A1P02461 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
COL3A1P02461 RNU6-766P-201ENST00000362478 107 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 RNU6-888P-201ENST00000363010 101 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 RNU1-96P-201ENST00000364163 162 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 RNU1-109P-201ENST00000383960 147 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 RNU6-756P-201ENST00000383997 107 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 SNORD12C-201ENST00000386307 89 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 RNU6-1186P-201ENST00000410429 97 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 RNU6-554P-201ENST00000410466 106 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 SUMO1P4-201ENST00000429430 302 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 AC233266.1-201ENST00000454518 96 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 MRPS17P9-201ENST00000511924 393 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 RNU7-99P-201ENST00000516271 62 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 SCARNA3-201ENST00000517097 143 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.07□□□□□ -2.08
COL3A1P02461 AC242852.1-201ENST00000612151 96 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 AP001318.4-201ENST00000616637 121 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 AC244015.1-201ENST00000622301 99 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 AC018630.2-201ENST00000534866 2403 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 SNORA14A-201ENST00000364773 135 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 SNORD24-201ENST00000383884 75 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 SNORA51.5-201ENST00000384126 131 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 MIR759-201ENST00000390224 91 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 SNORD72-201ENST00000390994 80 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 AL161788.1-201ENST00000441805 169 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.07□□□□□ -2.08
COL3A1P02461 MIR7157-201ENST00000635801 60 ntBASIC2.07□□□□□ -2.08
COL3A1P02461 AL589743.1-201ENST00000551932 2712 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 RNY4P6-201ENST00000363667 96 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 RNU6-294P-201ENST00000364999 102 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 Y_RNA.332-201ENST00000365271 113 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 Y_RNA.348-201ENST00000365403 103 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 RNU6-905P-201ENST00000384434 107 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 CALM2P4-201ENST00000430810 426 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 HMGN2P34-201ENST00000437647 269 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.06□□□□□ -2.08
COL3A1P02461 CYP2C59P-201ENST00000457790 269 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 NDUFA4P2-201ENST00000489989 244 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 Y_RNA.666-201ENST00000516187 112 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 RNU6-1270P-201ENST00000517128 108 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 RNU6-711P-201ENST00000517255 106 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.06□□□□□ -2.08
COL3A1P02461 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.06□□□□□ -2.08
COL3A1P02461 AC073413.2-201ENST00000604332 360 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 AC110079.1-202ENST00000635213 138 ntBASIC2.06□□□□□ -2.08
COL3A1P02461 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
COL3A1P02461 RNU1-72P-201ENST00000362976 153 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 Y_RNA.163-201ENST00000363702 113 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 RNU6-743P-201ENST00000364151 106 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 RNU6-461P-201ENST00000364195 107 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 Y_RNA.224-201ENST00000364308 111 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 RNA5SP139-201ENST00000364340 117 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 SNORD73B-201ENST00000364394 72 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 U8.6-201ENST00000364939 135 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 SNORA12.1-201ENST00000390873 148 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 SNORD77.3-201ENST00000391113 65 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 AC060773.1-201ENST00000421698 310 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 AC009238.1-201ENST00000442165 424 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 SNRPGP13-201ENST00000442212 177 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 AC009237.6-201ENST00000446969 424 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 RPS26P48-201ENST00000491713 339 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.05□□□□□ -2.08
COL3A1P02461 SNORA40.13-201ENST00000516379 120 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 RNU6-1149P-201ENST00000516810 97 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 RNU6-856P-201ENST00000516959 98 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 AL358944.1-201ENST00000528537 144 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 AC008507.4-201ENST00000585464 127 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 AC087685.1-201ENST00000587507 141 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 AC007229.1-201ENST00000590455 412 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 AL359075.3-201ENST00000613288 217 ntBASIC2.05□□□□□ -2.08
COL3A1P02461 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
COL3A1P02461 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
COL3A1P02461 RNA5SP393-201ENST00000363423 117 ntBASIC2.04□□□□□ -2.08
COL3A1P02461 SNORA63.5-201ENST00000363548 123 ntBASIC2.04□□□□□ -2.08
COL3A1P02461 Y_RNA.198-201ENST00000364013 98 ntBASIC2.04□□□□□ -2.08
COL3A1P02461 Y_RNA.253-201ENST00000364562 112 ntBASIC2.04□□□□□ -2.08
COL3A1P02461 Y_RNA.328-201ENST00000365208 113 ntBASIC2.04□□□□□ -2.08
COL3A1P02461 Y_RNA.366-201ENST00000365540 102 ntBASIC2.04□□□□□ -2.08
COL3A1P02461 RNU6-1014P-201ENST00000383940 103 ntBASIC2.04□□□□□ -2.08
COL3A1P02461 Y_RNA.549-201ENST00000384657 102 ntBASIC2.04□□□□□ -2.08
COL3A1P02461 HMGN2P32-201ENST00000444648 269 ntBASIC2.04□□□□□ -2.08
COL3A1P02461 RNA5SP480-201ENST00000516840 109 ntBASIC2.04□□□□□ -2.08
COL3A1P02461 SNORD59.2-201ENST00000516873 68 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms