Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MIR4299-201ENST00000577899 72 ntBASIC1.9□□□□□ -2.11
VPS4BO75351 MIR5089-201ENST00000580047 84 ntBASIC1.9□□□□□ -2.11
VPS4BO75351 MIR4713-201ENST00000582691 75 ntBASIC1.9□□□□□ -2.11
VPS4BO75351 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.9□□□□□ -2.11
VPS4BO75351 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.89□□□□□ -2.11
VPS4BO75351 RNU6-1123P-201ENST00000362347 106 ntBASIC1.89□□□□□ -2.11
VPS4BO75351 RNU6-1292P-201ENST00000383856 107 ntBASIC1.89□□□□□ -2.11
VPS4BO75351 RNU6-203P-201ENST00000384038 104 ntBASIC1.89□□□□□ -2.11
VPS4BO75351 RNU6-187P-201ENST00000384139 106 ntBASIC1.89□□□□□ -2.11
VPS4BO75351 Y_RNA.542-201ENST00000384641 111 ntBASIC1.89□□□□□ -2.11
VPS4BO75351 MIR676-201ENST00000390702 67 ntBASIC1.89□□□□□ -2.11
VPS4BO75351 AL445685.2-201ENST00000422551 342 ntBASIC1.89□□□□□ -2.11
VPS4BO75351 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.89□□□□□ -2.11
VPS4BO75351 MIR6844-201ENST00000637122 62 ntBASIC1.89□□□□□ -2.11
VPS4BO75351 ZNF355P-201ENST00000427301 3216 ntBASIC1.89□□□□□ -2.11
VPS4BO75351 SNORA25.7-201ENST00000364375 127 ntBASIC1.88□□□□□ -2.11
VPS4BO75351 Y_RNA.251-201ENST00000364551 99 ntBASIC1.88□□□□□ -2.11
VPS4BO75351 RNU6-1082P-201ENST00000364574 107 ntBASIC1.88□□□□□ -2.11
VPS4BO75351 RNU4-11P-201ENST00000365287 132 ntBASIC1.88□□□□□ -2.11
VPS4BO75351 MIR569-201ENST00000385228 96 ntBASIC1.88□□□□□ -2.11
VPS4BO75351 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
VPS4BO75351 RNA5SP57-201ENST00000459463 123 ntBASIC1.88□□□□□ -2.11
VPS4BO75351 RNU7-12P-201ENST00000516030 62 ntBASIC1.88□□□□□ -2.11
VPS4BO75351 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS4BO75351 MIR548X2-201ENST00000579776 100 ntBASIC1.88□□□□□ -2.11
VPS4BO75351 Y_RNA.783-201ENST00000613546 102 ntBASIC1.88□□□□□ -2.11
VPS4BO75351 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
VPS4BO75351 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.88□□□□□ -2.11
VPS4BO75351 SNORA1-201ENST00000384107 130 ntBASIC1.87□□□□□ -2.11
VPS4BO75351 Y_RNA.488-201ENST00000384403 102 ntBASIC1.87□□□□□ -2.11
VPS4BO75351 MIR624-201ENST00000385217 97 ntBASIC1.87□□□□□ -2.11
VPS4BO75351 MIR613-201ENST00000385248 95 ntBASIC1.87□□□□□ -2.11
VPS4BO75351 MIR802-201ENST00000390235 94 ntBASIC1.87□□□□□ -2.11
VPS4BO75351 MIR548O-201ENST00000408583 114 ntBASIC1.87□□□□□ -2.11
VPS4BO75351 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.87□□□□□ -2.11
VPS4BO75351 JTBP1-201ENST00000441314 247 ntBASIC1.87□□□□□ -2.11
VPS4BO75351 RPL23AP6-201ENST00000446637 472 ntBASIC1.87□□□□□ -2.11
VPS4BO75351 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.87□□□□□ -2.11
VPS4BO75351 RNU6-693P-201ENST00000516134 107 ntBASIC1.87□□□□□ -2.11
VPS4BO75351 AC112693.2-201ENST00000556538 232 ntBASIC1.87□□□□□ -2.11
VPS4BO75351 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.87□□□□□ -2.11
VPS4BO75351 RNY1P10-201ENST00000363268 113 ntBASIC1.86□□□□□ -2.11
VPS4BO75351 Y_RNA.547-201ENST00000384654 119 ntBASIC1.86□□□□□ -2.11
VPS4BO75351 MIR499A-201ENST00000384903 122 ntBASIC1.86□□□□□ -2.11
VPS4BO75351 RNU6-588P-201ENST00000410281 105 ntBASIC1.86□□□□□ -2.11
VPS4BO75351 AC004965.1-201ENST00000413033 213 ntBASIC1.86□□□□□ -2.11
VPS4BO75351 AC015922.2-201ENST00000435593 184 ntBASIC1.86□□□□□ -2.11
VPS4BO75351 AC245517.4-201ENST00000448601 281 ntBASIC1.86□□□□□ -2.11
VPS4BO75351 RNU7-25P-201ENST00000516544 62 ntBASIC1.86□□□□□ -2.11
VPS4BO75351 SNORA77B-201ENST00000578179 125 ntBASIC1.86□□□□□ -2.11
VPS4BO75351 AC103810.8-201ENST00000607347 118 ntBASIC1.86□□□□□ -2.11
VPS4BO75351 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
VPS4BO75351 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
VPS4BO75351 RNY1P11-201ENST00000363759 113 ntBASIC1.85□□□□□ -2.11
VPS4BO75351 RNU6-704P-201ENST00000364162 103 ntBASIC1.85□□□□□ -2.11
VPS4BO75351 Y_RNA.355-201ENST00000365462 98 ntBASIC1.85□□□□□ -2.11
VPS4BO75351 Y_RNA.568-201ENST00000384742 113 ntBASIC1.85□□□□□ -2.11
VPS4BO75351 MIR452-201ENST00000385020 85 ntBASIC1.85□□□□□ -2.11
VPS4BO75351 HMGN2P19-201ENST00000425149 265 ntBASIC1.85□□□□□ -2.11
VPS4BO75351 AC092991.1-201ENST00000477176 376 ntBASIC1.85□□□□□ -2.11
VPS4BO75351 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.85□□□□□ -2.11
VPS4BO75351 SNORD3E-202ENST00000627253 216 ntBASIC1.85□□□□□ -2.11
VPS4BO75351 AC095038.3-201ENST00000634439 195 ntBASIC1.85□□□□□ -2.11
VPS4BO75351 WWP1P1-201ENST00000466609 2769 ntBASIC1.85□□□□□ -2.11
VPS4BO75351 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
VPS4BO75351 SNORA25.9-201ENST00000365087 128 ntBASIC1.84□□□□□ -2.11
VPS4BO75351 RNU6-439P-201ENST00000384188 106 ntBASIC1.84□□□□□ -2.11
VPS4BO75351 SNORD38C-201ENST00000384381 69 ntBASIC1.84□□□□□ -2.11
VPS4BO75351 SNORD77.3-201ENST00000391113 65 ntBASIC1.84□□□□□ -2.11
VPS4BO75351 RNA5SP127-201ENST00000411051 133 ntBASIC1.84□□□□□ -2.11
VPS4BO75351 AF228730.3-201ENST00000436691 102 ntBASIC1.84□□□□□ -2.11
VPS4BO75351 RNU4-57P-201ENST00000515980 135 ntBASIC1.84□□□□□ -2.11
VPS4BO75351 RNU6-406P-201ENST00000516470 107 ntBASIC1.84□□□□□ -2.11
VPS4BO75351 SNORA25.15-201ENST00000516487 89 ntBASIC1.84□□□□□ -2.11
VPS4BO75351 RNU6-1270P-201ENST00000517128 108 ntBASIC1.84□□□□□ -2.11
VPS4BO75351 AC134878.1-201ENST00000619901 243 ntBASIC1.84□□□□□ -2.11
VPS4BO75351 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
VPS4BO75351 RNU6-199P-201ENST00000362954 107 ntBASIC1.83□□□□□ -2.12
VPS4BO75351 RNU6-414P-201ENST00000363705 104 ntBASIC1.83□□□□□ -2.12
VPS4BO75351 Y_RNA.343-201ENST00000365354 112 ntBASIC1.83□□□□□ -2.12
VPS4BO75351 RNU6-1336P-201ENST00000383886 109 ntBASIC1.83□□□□□ -2.12
VPS4BO75351 Y_RNA.410-201ENST00000383992 113 ntBASIC1.83□□□□□ -2.12
VPS4BO75351 Y_RNA.497-201ENST00000384447 98 ntBASIC1.83□□□□□ -2.12
VPS4BO75351 SNORD37.2-201ENST00000391075 66 ntBASIC1.83□□□□□ -2.12
VPS4BO75351 RNU6-321P-201ENST00000410912 106 ntBASIC1.83□□□□□ -2.12
VPS4BO75351 RNU6-938P-201ENST00000411285 103 ntBASIC1.83□□□□□ -2.12
VPS4BO75351 AC093850.1-201ENST00000454121 251 ntBASIC1.83□□□□□ -2.12
VPS4BO75351 TRMT112P2-201ENST00000512910 132 ntBASIC1.83□□□□□ -2.12
VPS4BO75351 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
VPS4BO75351 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
VPS4BO75351 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
VPS4BO75351 SNORD115-28-201ENST00000363931 81 ntBASIC1.82□□□□□ -2.12
VPS4BO75351 SNORA16.1-201ENST00000364597 132 ntBASIC1.82□□□□□ -2.12
VPS4BO75351 MIR526A1-201ENST00000384897 85 ntBASIC1.82□□□□□ -2.12
VPS4BO75351 MIR513C-201ENST00000401352 84 ntBASIC1.82□□□□□ -2.12
VPS4BO75351 AC087499.4-201ENST00000448505 178 ntBASIC1.82□□□□□ -2.12
VPS4BO75351 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.82□□□□□ -2.12
VPS4BO75351 MIR4778-201ENST00000577635 80 ntBASIC1.82□□□□□ -2.12
VPS4BO75351 MIR3129-201ENST00000581095 76 ntBASIC1.82□□□□□ -2.12
VPS4BO75351 AC131055.1-201ENST00000584626 316 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 166.6 ms