Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 MRPL35P3-201ENST00000421557 364 ntBASIC1.2□□□□□ -2.22
HOXC11O43248 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.2□□□□□ -2.22
HOXC11O43248 snoU13.25-201ENST00000458945 104 ntBASIC1.2□□□□□ -2.22
HOXC11O43248 SNORD77.4-201ENST00000516158 81 ntBASIC1.2□□□□□ -2.22
HOXC11O43248 RNU6-327P-201ENST00000516270 127 ntBASIC1.2□□□□□ -2.22
HOXC11O43248 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
HOXC11O43248 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
HOXC11O43248 Y_RNA.82-201ENST00000363000 102 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 Y_RNA.92-201ENST00000363043 102 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 Y_RNA.224-201ENST00000364308 111 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 Y_RNA.235-201ENST00000364412 102 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 Y_RNA.306-201ENST00000365015 102 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 Y_RNA.312-201ENST00000365089 102 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 Y_RNA.322-201ENST00000365151 102 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 SNORA51.10-201ENST00000384418 136 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 SNORA75.2-201ENST00000391138 150 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 SNORA75.3-201ENST00000391231 150 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 MIR1302-3-201ENST00000408128 138 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 Y_RNA.650-201ENST00000459002 102 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 RNU7-25P-201ENST00000516544 62 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 Y_RNA.777-201ENST00000516982 102 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 Y_RNA.771-201ENST00000598668 102 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 Y_RNA.789-201ENST00000622480 102 ntBASIC1.19□□□□□ -2.22
HOXC11O43248 MIR96-201ENST00000362288 78 ntBASIC1.18□□□□□ -2.22
HOXC11O43248 RNU6-1309P-201ENST00000363305 108 ntBASIC1.18□□□□□ -2.22
HOXC11O43248 Y_RNA.229-201ENST00000364347 113 ntBASIC1.18□□□□□ -2.22
HOXC11O43248 Y_RNA.537-201ENST00000384626 109 ntBASIC1.18□□□□□ -2.22
HOXC11O43248 MIR518E-201ENST00000385252 88 ntBASIC1.18□□□□□ -2.22
HOXC11O43248 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.18□□□□□ -2.22
HOXC11O43248 RPS23P4-201ENST00000487908 423 ntBASIC1.18□□□□□ -2.22
HOXC11O43248 RNU4-57P-201ENST00000515980 135 ntBASIC1.18□□□□□ -2.22
HOXC11O43248 Y_RNA.666-201ENST00000516187 112 ntBASIC1.18□□□□□ -2.22
HOXC11O43248 RNU11-2P-201ENST00000516898 142 ntBASIC1.18□□□□□ -2.22
HOXC11O43248 MIR4452-201ENST00000583004 71 ntBASIC1.18□□□□□ -2.22
HOXC11O43248 SEPT14P17-201ENST00000617978 177 ntBASIC1.18□□□□□ -2.22
HOXC11O43248 AC012676.2-201ENST00000619258 186 ntBASIC1.18□□□□□ -2.22
HOXC11O43248 Y_RNA.54-201ENST00000362766 105 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 Y_RNA.288-201ENST00000364854 92 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 Y_RNA.352-201ENST00000365439 102 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 Y_RNA.508-201ENST00000384502 114 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 Y_RNA.547-201ENST00000384654 119 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 MIR200A-201ENST00000384875 90 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 MIR570-201ENST00000384917 97 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 SNORA26-201ENST00000391286 122 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 RNU6-847P-201ENST00000411115 108 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 SNORD2.1-201ENST00000458762 69 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 OR2A41P-201ENST00000473586 105 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 RPS26P48-201ENST00000491713 339 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 RN7SKP179-201ENST00000516126 217 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 RNU6-365P-201ENST00000517113 106 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 AC100767.1-201ENST00000528178 123 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 HSPE1P19-201ENST00000603327 295 ntBASIC1.17□□□□□ -2.22
HOXC11O43248 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
HOXC11O43248 Y_RNA.162-201ENST00000363683 102 ntBASIC1.16□□□□□ -2.22
HOXC11O43248 RNU1-93P-201ENST00000364704 169 ntBASIC1.16□□□□□ -2.22
HOXC11O43248 SNORD114-24-201ENST00000365029 72 ntBASIC1.16□□□□□ -2.22
HOXC11O43248 SNORD114-22-201ENST00000365423 72 ntBASIC1.16□□□□□ -2.22
HOXC11O43248 Y_RNA.396-201ENST00000383949 103 ntBASIC1.16□□□□□ -2.22
HOXC11O43248 Y_RNA.486-201ENST00000384398 107 ntBASIC1.16□□□□□ -2.22
HOXC11O43248 AL358176.2-201ENST00000425769 204 ntBASIC1.16□□□□□ -2.22
HOXC11O43248 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.16□□□□□ -2.22
HOXC11O43248 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.16□□□□□ -2.22
HOXC11O43248 SCARNA15.1-201ENST00000516384 125 ntBASIC1.16□□□□□ -2.22
HOXC11O43248 AC090821.2-201ENST00000523552 176 ntBASIC1.16□□□□□ -2.22
HOXC11O43248 AC109810.1-201ENST00000534066 224 ntBASIC1.16□□□□□ -2.22
HOXC11O43248 MIR4295-201ENST00000585286 85 ntBASIC1.16□□□□□ -2.22
HOXC11O43248 Y_RNA.355-201ENST00000365462 98 ntBASIC1.15□□□□□ -2.23
HOXC11O43248 RNU6-472P-201ENST00000384299 107 ntBASIC1.15□□□□□ -2.23
HOXC11O43248 Y_RNA.556-201ENST00000384677 113 ntBASIC1.15□□□□□ -2.23
HOXC11O43248 Y_RNA.572-201ENST00000384757 98 ntBASIC1.15□□□□□ -2.23
HOXC11O43248 MIR1185-1-201ENST00000408598 86 ntBASIC1.15□□□□□ -2.23
HOXC11O43248 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.15□□□□□ -2.23
HOXC11O43248 MTND2P23-201ENST00000422990 651 ntBASIC1.15□□□□□ -2.23
HOXC11O43248 RNU6-693P-201ENST00000516134 107 ntBASIC1.15□□□□□ -2.23
HOXC11O43248 RNU6-1299P-201ENST00000516316 100 ntBASIC1.15□□□□□ -2.23
HOXC11O43248 RNU6-1045P-201ENST00000516321 107 ntBASIC1.15□□□□□ -2.23
HOXC11O43248 AP003716.2-201ENST00000528260 108 ntBASIC1.15□□□□□ -2.23
HOXC11O43248 Y_RNA.122-201ENST00000363331 96 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 SNORD115-28-201ENST00000363931 81 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 Y_RNA.241-201ENST00000364470 117 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 Y_RNA.269-201ENST00000364685 89 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 RNY3P5-201ENST00000384127 102 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 MIR548H3-201ENST00000408771 118 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 RNU2-70P-201ENST00000410718 179 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 RNU6-651P-201ENST00000411040 105 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 RNU2-55P-201ENST00000411146 174 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 AC087499.4-201ENST00000448505 178 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 AC087343.1-201ENST00000477341 475 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 UBL5P1-201ENST00000507979 193 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 RNU6-504P-201ENST00000516568 104 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 AC012433.1-201ENST00000588916 398 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 MIR4791-201ENST00000607666 84 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 AC243994.1-201ENST00000618627 109 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 AC099654.10-201ENST00000640395 161 ntBASIC1.14□□□□□ -2.23
HOXC11O43248 Y_RNA.518-201ENST00000384552 113 ntBASIC1.13□□□□□ -2.23
HOXC11O43248 MIR942-201ENST00000401111 86 ntBASIC1.13□□□□□ -2.23
HOXC11O43248 SNORD124-201ENST00000459577 104 ntBASIC1.13□□□□□ -2.23
HOXC11O43248 MIR4282-201ENST00000583613 67 ntBASIC1.13□□□□□ -2.23
HOXC11O43248 AL365265.1-201ENST00000621045 234 ntBASIC1.13□□□□□ -2.23
HOXC11O43248 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms