Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 RNU6-440P-201ENST00000390882 105 ntBASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-717P-201ENST00000459076 104 ntBASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 RNA5SP57-201ENST00000459463 123 ntBASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 AL049830.1-201ENST00000468034 425 ntBASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 SNORD77.4-201ENST00000516158 81 ntBASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 SNORA31.17-201ENST00000516953 127 ntBASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 MIR2681-201ENST00000581814 105 ntBASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 uc_338.4-201ENST00000616635 176 ntBASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 Y_RNA.778-201ENST00000620203 90 ntBASIC2.14□□□□□ -2.07
NR2E3Q9Y5X4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-704P-201ENST00000364162 103 ntBASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-392P-201ENST00000364926 101 ntBASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 SNORA12.1-201ENST00000390873 148 ntBASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-131P-201ENST00000391144 107 ntBASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 RN7SKP200-201ENST00000410564 320 ntBASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 AC244636.1-201ENST00000421152 228 ntBASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 AL021397.1-201ENST00000451806 248 ntBASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 AC107027.2-201ENST00000512197 115 ntBASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 MIR4452-201ENST00000583004 71 ntBASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 SNORA28-201ENST00000606769 126 ntBASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
NR2E3Q9Y5X4 Y_RNA.215-201ENST00000364204 112 ntBASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 SNORD113-1-201ENST00000365321 69 ntBASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 MIR569-201ENST00000385228 96 ntBASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 RNA5SP482-201ENST00000391269 118 ntBASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 AC006461.1-201ENST00000412637 326 ntBASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 HSPE1P9-201ENST00000440046 311 ntBASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 RNU7-95P-201ENST00000459222 64 ntBASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 snoU13.27-201ENST00000459278 104 ntBASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 SNORA31.10-201ENST00000516482 106 ntBASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 MIR4303-201ENST00000581299 66 ntBASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 MIR3935-201ENST00000583472 104 ntBASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 AC097639.2-201ENST00000603159 172 ntBASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 MTND1P7-201ENST00000632801 297 ntBASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 U2.22-201ENST00000636441 106 ntBASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
NR2E3Q9Y5X4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 SNORD114-26-201ENST00000363543 72 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-151P-201ENST00000364158 107 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-978P-201ENST00000364371 103 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 Y_RNA.265-201ENST00000364677 108 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 SNORA4.2-201ENST00000365313 147 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-768P-201ENST00000384683 107 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-360P-201ENST00000390944 104 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 RNU2-55P-201ENST00000411146 174 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 AC004965.1-201ENST00000413033 213 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 RNU7-197P-201ENST00000458836 62 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 HMGN1P7-201ENST00000491722 313 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-250P-201ENST00000516958 103 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 AL160236.1-201ENST00000556317 195 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 AC022254.1-201ENST00000567857 235 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 DNAJC19P2-201ENST00000593340 302 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 AL591926.4-201ENST00000616895 298 ntBASIC2.11□□□□□ -2.07
NR2E3Q9Y5X4 Y_RNA.91-201ENST00000363042 107 ntBASIC2.1□□□□□ -2.07
NR2E3Q9Y5X4 RNA5SP325-201ENST00000363756 130 ntBASIC2.1□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-1138P-201ENST00000365359 106 ntBASIC2.1□□□□□ -2.07
NR2E3Q9Y5X4 Y_RNA.568-201ENST00000384742 113 ntBASIC2.1□□□□□ -2.07
NR2E3Q9Y5X4 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.1□□□□□ -2.07
NR2E3Q9Y5X4 RPL23AP6-201ENST00000446637 472 ntBASIC2.1□□□□□ -2.07
NR2E3Q9Y5X4 RNA5SP272-201ENST00000516095 111 ntBASIC2.1□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-197P-201ENST00000516680 100 ntBASIC2.1□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-789P-201ENST00000517105 102 ntBASIC2.1□□□□□ -2.07
NR2E3Q9Y5X4 MIR4709-201ENST00000577272 72 ntBASIC2.1□□□□□ -2.07
NR2E3Q9Y5X4 MIR4299-201ENST00000577899 72 ntBASIC2.1□□□□□ -2.07
NR2E3Q9Y5X4 MIR8081-201ENST00000611533 95 ntBASIC2.1□□□□□ -2.07
NR2E3Q9Y5X4 RMST_2.1-201ENST00000617263 136 ntBASIC2.1□□□□□ -2.07
NR2E3Q9Y5X4 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
NR2E3Q9Y5X4 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 Y_RNA.337-201ENST00000365312 102 ntBASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 Y_RNA.486-201ENST00000384398 107 ntBASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 RNU6-1031P-201ENST00000384773 107 ntBASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 MIR522-201ENST00000385071 87 ntBASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 SNORD72-201ENST00000390994 80 ntBASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 AL034345.1-201ENST00000407768 123 ntBASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 FTH1P12-201ENST00000432137 551 ntBASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 STAG3L5P-204ENST00000443759 179 ntBASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 RNU7-149P-201ENST00000516739 59 ntBASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 MIR5089-201ENST00000580047 84 ntBASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 MIR4713-201ENST00000582691 75 ntBASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 AC012493.3-201ENST00000604494 112 ntBASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 MIR502-201ENST00000606349 86 ntBASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 JPX_2.1-201ENST00000614161 69 ntBASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
NR2E3Q9Y5X4 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
NR2E3Q9Y5X4 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.08□□□□□ -2.08
NR2E3Q9Y5X4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
NR2E3Q9Y5X4 Y_RNA.634-201ENST00000364811 113 ntBASIC2.08□□□□□ -2.08
NR2E3Q9Y5X4 RNU4-11P-201ENST00000365287 132 ntBASIC2.08□□□□□ -2.08
NR2E3Q9Y5X4 SUMO2P12-201ENST00000405924 140 ntBASIC2.08□□□□□ -2.08
NR2E3Q9Y5X4 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.08□□□□□ -2.08
NR2E3Q9Y5X4 SNRPGP10-201ENST00000432323 225 ntBASIC2.08□□□□□ -2.08
NR2E3Q9Y5X4 AC009474.2-201ENST00000451383 136 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 169.5 ms