Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU6-94P-201ENST00000607728 107 ntBASIC3.14□□□□□ -1.91
CHMP3Q9Y3E7 MIR8054-201ENST00000620877 86 ntBASIC3.14□□□□□ -1.91
CHMP3Q9Y3E7 U4.3-201ENST00000621047 82 ntBASIC3.14□□□□□ -1.91
CHMP3Q9Y3E7 AC091932.4-201ENST00000623386 200 ntBASIC3.14□□□□□ -1.91
CHMP3Q9Y3E7 AL596211.1-201ENST00000569873 2277 ntBASIC3.14□□□□□ -1.91
CHMP3Q9Y3E7 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
CHMP3Q9Y3E7 MIR342-201ENST00000362212 99 ntBASIC3.13□□□□□ -1.91
CHMP3Q9Y3E7 SNORD114-30-201ENST00000364448 72 ntBASIC3.13□□□□□ -1.91
CHMP3Q9Y3E7 U8.6-201ENST00000364939 135 ntBASIC3.13□□□□□ -1.91
CHMP3Q9Y3E7 RNU6-440P-201ENST00000390882 105 ntBASIC3.13□□□□□ -1.91
CHMP3Q9Y3E7 BX510359.4-201ENST00000423750 193 ntBASIC3.13□□□□□ -1.91
CHMP3Q9Y3E7 SNX2P2-201ENST00000424553 323 ntBASIC3.13□□□□□ -1.91
CHMP3Q9Y3E7 AC104389.3-201ENST00000445629 235 ntBASIC3.13□□□□□ -1.91
CHMP3Q9Y3E7 RN7SL499P-201ENST00000481141 276 ntBASIC3.13□□□□□ -1.91
CHMP3Q9Y3E7 SNORA31.10-201ENST00000516482 106 ntBASIC3.13□□□□□ -1.91
CHMP3Q9Y3E7 MIRLET7C-201ENST00000362160 84 ntBASIC3.12□□□□□ -1.91
CHMP3Q9Y3E7 RNY4P6-201ENST00000363667 96 ntBASIC3.12□□□□□ -1.91
CHMP3Q9Y3E7 Y_RNA.344-201ENST00000365381 112 ntBASIC3.12□□□□□ -1.91
CHMP3Q9Y3E7 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC3.12□□□□□ -1.91
CHMP3Q9Y3E7 RN7SL429P-201ENST00000479090 223 ntBASIC3.12□□□□□ -1.91
CHMP3Q9Y3E7 RN7SL489P-201ENST00000486185 223 ntBASIC3.12□□□□□ -1.91
CHMP3Q9Y3E7 RN7SL327P-201ENST00000488659 223 ntBASIC3.12□□□□□ -1.91
CHMP3Q9Y3E7 RNU6-109P-201ENST00000516364 107 ntBASIC3.12□□□□□ -1.91
CHMP3Q9Y3E7 RNU2-35P-201ENST00000516446 142 ntBASIC3.12□□□□□ -1.91
CHMP3Q9Y3E7 RNA5SP281-201ENST00000516504 135 ntBASIC3.12□□□□□ -1.91
CHMP3Q9Y3E7 RNU6-184P-201ENST00000516514 107 ntBASIC3.12□□□□□ -1.91
CHMP3Q9Y3E7 RN7SL853P-201ENST00000617250 223 ntBASIC3.12□□□□□ -1.91
CHMP3Q9Y3E7 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CHMP3Q9Y3E7 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC3.11□□□□□ -1.91
CHMP3Q9Y3E7 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.11□□□□□ -1.91
CHMP3Q9Y3E7 RNA5SP289-201ENST00000362332 137 ntBASIC3.11□□□□□ -1.91
CHMP3Q9Y3E7 Y_RNA.49-201ENST00000362714 112 ntBASIC3.11□□□□□ -1.91
CHMP3Q9Y3E7 RNU6-1131P-201ENST00000364955 107 ntBASIC3.11□□□□□ -1.91
CHMP3Q9Y3E7 RNU6-49P-201ENST00000384256 107 ntBASIC3.11□□□□□ -1.91
CHMP3Q9Y3E7 RNU6-163P-201ENST00000384396 106 ntBASIC3.11□□□□□ -1.91
CHMP3Q9Y3E7 MIR590-201ENST00000385008 97 ntBASIC3.11□□□□□ -1.91
CHMP3Q9Y3E7 HSPE1P9-201ENST00000440046 311 ntBASIC3.11□□□□□ -1.91
CHMP3Q9Y3E7 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.11□□□□□ -1.91
CHMP3Q9Y3E7 AC084364.2-201ENST00000546924 395 ntBASIC3.11□□□□□ -1.91
CHMP3Q9Y3E7 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.11□□□□□ -1.91
CHMP3Q9Y3E7 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
CHMP3Q9Y3E7 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CHMP3Q9Y3E7 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
CHMP3Q9Y3E7 SNORA31.4-201ENST00000516049 129 ntBASIC3.1□□□□□ -1.91
CHMP3Q9Y3E7 IGKV3-31-201ENST00000523109 329 ntBASIC3.1□□□□□ -1.91
CHMP3Q9Y3E7 AC068339.1-201ENST00000526965 141 ntBASIC3.1□□□□□ -1.91
CHMP3Q9Y3E7 MIR5009-201ENST00000578736 100 ntBASIC3.1□□□□□ -1.91
CHMP3Q9Y3E7 MIR4305-201ENST00000583252 102 ntBASIC3.1□□□□□ -1.91
CHMP3Q9Y3E7 SNORA25.6-201ENST00000364121 118 ntBASIC3.09□□□□□ -1.91
CHMP3Q9Y3E7 Y_RNA.494-201ENST00000384432 111 ntBASIC3.09□□□□□ -1.91
CHMP3Q9Y3E7 RNU7-28P-201ENST00000516759 62 ntBASIC3.09□□□□□ -1.91
CHMP3Q9Y3E7 MIR5094-201ENST00000578766 85 ntBASIC3.09□□□□□ -1.91
CHMP3Q9Y3E7 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CHMP3Q9Y3E7 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.08□□□□□ -1.92
CHMP3Q9Y3E7 MIR597-201ENST00000384968 97 ntBASIC3.08□□□□□ -1.92
CHMP3Q9Y3E7 SNORA11.4-201ENST00000408823 129 ntBASIC3.08□□□□□ -1.92
CHMP3Q9Y3E7 AC087499.4-201ENST00000448505 178 ntBASIC3.08□□□□□ -1.92
CHMP3Q9Y3E7 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.08□□□□□ -1.92
CHMP3Q9Y3E7 AC026271.5-201ENST00000577873 130 ntBASIC3.08□□□□□ -1.92
CHMP3Q9Y3E7 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
CHMP3Q9Y3E7 RNU1-58P-201ENST00000362413 163 ntBASIC3.07□□□□□ -1.92
CHMP3Q9Y3E7 SNORD73B-201ENST00000364394 72 ntBASIC3.07□□□□□ -1.92
CHMP3Q9Y3E7 MIR488-201ENST00000365739 83 ntBASIC3.07□□□□□ -1.92
CHMP3Q9Y3E7 SNORA67.4-201ENST00000384688 142 ntBASIC3.07□□□□□ -1.92
CHMP3Q9Y3E7 MIR548D2-201ENST00000384955 97 ntBASIC3.07□□□□□ -1.92
CHMP3Q9Y3E7 MIR759-201ENST00000390224 91 ntBASIC3.07□□□□□ -1.92
CHMP3Q9Y3E7 RNU6-826P-201ENST00000516827 104 ntBASIC3.07□□□□□ -1.92
CHMP3Q9Y3E7 SNORD53-201ENST00000579969 78 ntBASIC3.07□□□□□ -1.92
CHMP3Q9Y3E7 AC005786.1-201ENST00000588553 154 ntBASIC3.07□□□□□ -1.92
CHMP3Q9Y3E7 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CHMP3Q9Y3E7 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
CHMP3Q9Y3E7 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CHMP3Q9Y3E7 U8.16-201ENST00000391279 133 ntBASIC3.06□□□□□ -1.92
CHMP3Q9Y3E7 AC234781.5-201ENST00000508429 271 ntBASIC3.06□□□□□ -1.92
CHMP3Q9Y3E7 MIR4658-201ENST00000584344 65 ntBASIC3.06□□□□□ -1.92
CHMP3Q9Y3E7 AC069114.2-201ENST00000604699 304 ntBASIC3.06□□□□□ -1.92
CHMP3Q9Y3E7 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.06□□□□□ -1.92
CHMP3Q9Y3E7 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
CHMP3Q9Y3E7 RNA5SP393-201ENST00000363423 117 ntBASIC3.05□□□□□ -1.92
CHMP3Q9Y3E7 Y_RNA.241-201ENST00000364470 117 ntBASIC3.05□□□□□ -1.92
CHMP3Q9Y3E7 RNU1-91P-201ENST00000364746 163 ntBASIC3.05□□□□□ -1.92
CHMP3Q9Y3E7 RNU6-294P-201ENST00000364999 102 ntBASIC3.05□□□□□ -1.92
CHMP3Q9Y3E7 SNORA4.2-201ENST00000365313 147 ntBASIC3.05□□□□□ -1.92
CHMP3Q9Y3E7 SNORD38C-201ENST00000384381 69 ntBASIC3.05□□□□□ -1.92
CHMP3Q9Y3E7 RNU1-148P-201ENST00000384472 162 ntBASIC3.05□□□□□ -1.92
CHMP3Q9Y3E7 RNU7-80P-201ENST00000459562 61 ntBASIC3.05□□□□□ -1.92
CHMP3Q9Y3E7 SNORA40.13-201ENST00000516379 120 ntBASIC3.05□□□□□ -1.92
CHMP3Q9Y3E7 RNU7-181P-201ENST00000517234 74 ntBASIC3.05□□□□□ -1.92
CHMP3Q9Y3E7 AC141557.1-201ENST00000540982 400 ntBASIC3.05□□□□□ -1.92
CHMP3Q9Y3E7 AL590808.1-201ENST00000618696 141 ntBASIC3.05□□□□□ -1.92
CHMP3Q9Y3E7 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
CHMP3Q9Y3E7 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
CHMP3Q9Y3E7 RNU6-1019P-201ENST00000364424 107 ntBASIC3.04□□□□□ -1.92
CHMP3Q9Y3E7 SNORA27-201ENST00000384323 126 ntBASIC3.04□□□□□ -1.92
CHMP3Q9Y3E7 AL627390.1-201ENST00000396055 340 ntBASIC3.04□□□□□ -1.92
CHMP3Q9Y3E7 AL359511.1-201ENST00000402970 211 ntBASIC3.04□□□□□ -1.92
CHMP3Q9Y3E7 RN7SKP200-201ENST00000410564 320 ntBASIC3.04□□□□□ -1.92
CHMP3Q9Y3E7 HMGN2P35-201ENST00000412164 270 ntBASIC3.04□□□□□ -1.92
CHMP3Q9Y3E7 RNU7-26P-201ENST00000458980 63 ntBASIC3.04□□□□□ -1.92
CHMP3Q9Y3E7 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms