Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SNORD115-46-201ENST00000390982 71 ntBASIC0.69□□□□□ -2.3
FOXA2Q9Y261 Y_RNA.645-201ENST00000391229 102 ntBASIC0.69□□□□□ -2.3
FOXA2Q9Y261 RNA5SP95-201ENST00000410319 137 ntBASIC0.69□□□□□ -2.3
FOXA2Q9Y261 RNU6-613P-201ENST00000410412 108 ntBASIC0.69□□□□□ -2.3
FOXA2Q9Y261 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.69□□□□□ -2.3
FOXA2Q9Y261 PMCHL1-202ENST00000423102 261 ntBASIC0.69□□□□□ -2.3
FOXA2Q9Y261 SNORA40.15-201ENST00000516884 107 ntBASIC0.69□□□□□ -2.3
FOXA2Q9Y261 RNU6-988P-201ENST00000519081 107 ntBASIC0.69□□□□□ -2.3
FOXA2Q9Y261 FAM71BP1-201ENST00000604431 523 ntBASIC0.69□□□□□ -2.3
FOXA2Q9Y261 AC037487.3-201ENST00000606668 112 ntBASIC0.69□□□□□ -2.3
FOXA2Q9Y261 MIR4791-201ENST00000607666 84 ntBASIC0.69□□□□□ -2.3
FOXA2Q9Y261 SNORA25.9-201ENST00000365087 128 ntBASIC0.68□□□□□ -2.3
FOXA2Q9Y261 RNU6-514P-201ENST00000384208 107 ntBASIC0.68□□□□□ -2.3
FOXA2Q9Y261 RNU6-110P-201ENST00000384508 104 ntBASIC0.68□□□□□ -2.3
FOXA2Q9Y261 MIR1276-201ENST00000408707 83 ntBASIC0.68□□□□□ -2.3
FOXA2Q9Y261 MIR1252-201ENST00000408861 65 ntBASIC0.68□□□□□ -2.3
FOXA2Q9Y261 RNU6-847P-201ENST00000411115 108 ntBASIC0.68□□□□□ -2.3
FOXA2Q9Y261 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.68□□□□□ -2.3
FOXA2Q9Y261 MTCO1P5-201ENST00000433573 344 ntBASIC0.68□□□□□ -2.3
FOXA2Q9Y261 MTND4LP30-201ENST00000454092 297 ntBASIC0.68□□□□□ -2.3
FOXA2Q9Y261 MIR367-201ENST00000362299 68 ntBASIC0.67□□□□□ -2.3
FOXA2Q9Y261 SNORA25.1-201ENST00000362326 128 ntBASIC0.67□□□□□ -2.3
FOXA2Q9Y261 RNU6-474P-201ENST00000384243 107 ntBASIC0.67□□□□□ -2.3
FOXA2Q9Y261 SNORA53-201ENST00000391141 249 ntBASIC0.67□□□□□ -2.3
FOXA2Q9Y261 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.67□□□□□ -2.3
FOXA2Q9Y261 AC107297.1-201ENST00000459991 176 ntBASIC0.67□□□□□ -2.3
FOXA2Q9Y261 RNU4-57P-201ENST00000515980 135 ntBASIC0.67□□□□□ -2.3
FOXA2Q9Y261 RNU6-351P-201ENST00000516097 100 ntBASIC0.67□□□□□ -2.3
FOXA2Q9Y261 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.67□□□□□ -2.3
FOXA2Q9Y261 MIR548AO-201ENST00000579992 96 ntBASIC0.67□□□□□ -2.3
FOXA2Q9Y261 AC013244.2-201ENST00000603396 103 ntBASIC0.67□□□□□ -2.3
FOXA2Q9Y261 MIR6504-201ENST00000613520 61 ntBASIC0.67□□□□□ -2.3
FOXA2Q9Y261 AC013791.1-201ENST00000616619 62 ntBASIC0.67□□□□□ -2.3
FOXA2Q9Y261 AL160413.1-201ENST00000622780 310 ntBASIC0.67□□□□□ -2.3
FOXA2Q9Y261 MTND1P7-201ENST00000632801 297 ntBASIC0.67□□□□□ -2.3
FOXA2Q9Y261 MIR1-1-201ENST00000362147 71 ntBASIC0.66□□□□□ -2.3
FOXA2Q9Y261 MIR96-201ENST00000362288 78 ntBASIC0.66□□□□□ -2.3
FOXA2Q9Y261 Y_RNA.28-201ENST00000362554 111 ntBASIC0.66□□□□□ -2.3
FOXA2Q9Y261 Y_RNA.293-201ENST00000364908 93 ntBASIC0.66□□□□□ -2.3
FOXA2Q9Y261 RNU6-290P-201ENST00000365212 101 ntBASIC0.66□□□□□ -2.3
FOXA2Q9Y261 Y_RNA.581-201ENST00000391017 97 ntBASIC0.66□□□□□ -2.3
FOXA2Q9Y261 MIR548O-201ENST00000408583 114 ntBASIC0.66□□□□□ -2.3
FOXA2Q9Y261 RNU6-383P-201ENST00000410864 94 ntBASIC0.66□□□□□ -2.3
FOXA2Q9Y261 Y_RNA.676-201ENST00000516393 96 ntBASIC0.66□□□□□ -2.3
FOXA2Q9Y261 MIR4698-201ENST00000577795 80 ntBASIC0.66□□□□□ -2.3
FOXA2Q9Y261 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.66□□□□□ -2.3
FOXA2Q9Y261 MTND4P29-201ENST00000503122 1372 ntBASIC0.66□□□□□ -2.3
FOXA2Q9Y261 Y_RNA.168-201ENST00000363740 102 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 RNU1-93P-201ENST00000364704 169 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 RNU5E-4P-201ENST00000364931 120 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 RNU6-867P-201ENST00000364956 107 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 Y_RNA.380-201ENST00000365663 111 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 Y_RNA.460-201ENST00000384255 102 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 MIR146A-201ENST00000385201 99 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 RNA5SP496-201ENST00000391240 109 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 MIR1827-201ENST00000408549 66 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 Y_RNA.631-201ENST00000459607 101 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 AC098869.1-201ENST00000481627 292 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.65□□□□□ -2.31
FOXA2Q9Y261 RNU7-25P-201ENST00000516544 62 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 RNU7-149P-201ENST00000516739 59 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 RNU2-31P-201ENST00000516954 155 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 MIR4724-201ENST00000579485 89 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 AL049861.1-201ENST00000603130 150 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 AP000753.3-201ENST00000604083 169 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 AC108706.1-201ENST00000611053 297 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 uc_338.4-201ENST00000616635 176 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 AC243994.1-201ENST00000618627 109 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 AC022140.2-201ENST00000623500 188 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 MIR6767-201ENST00000637302 66 ntBASIC0.65□□□□□ -2.31
FOXA2Q9Y261 HSBP1P2-201ENST00000299671 229 ntBASIC0.64□□□□□ -2.31
FOXA2Q9Y261 Y_RNA.191-201ENST00000363972 113 ntBASIC0.64□□□□□ -2.31
FOXA2Q9Y261 Y_RNA.376-201ENST00000365638 108 ntBASIC0.64□□□□□ -2.31
FOXA2Q9Y261 MIR499A-201ENST00000384903 122 ntBASIC0.64□□□□□ -2.31
FOXA2Q9Y261 BTF3P11-201ENST00000426582 477 ntBASIC0.64□□□□□ -2.31
FOXA2Q9Y261 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.64□□□□□ -2.31
FOXA2Q9Y261 COX6CP6-201ENST00000490840 228 ntBASIC0.64□□□□□ -2.31
FOXA2Q9Y261 MIR5692C2-201ENST00000577959 77 ntBASIC0.64□□□□□ -2.31
FOXA2Q9Y261 MIR3973-201ENST00000579824 107 ntBASIC0.64□□□□□ -2.31
FOXA2Q9Y261 Y_RNA.128-201ENST00000363391 112 ntBASIC0.63□□□□□ -2.31
FOXA2Q9Y261 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
FOXA2Q9Y261 Y_RNA.394-201ENST00000383942 103 ntBASIC0.63□□□□□ -2.31
FOXA2Q9Y261 Y_RNA.547-201ENST00000384654 119 ntBASIC0.63□□□□□ -2.31
FOXA2Q9Y261 SNORD105-201ENST00000386910 85 ntBASIC0.63□□□□□ -2.31
FOXA2Q9Y261 Y_RNA.637-201ENST00000459424 114 ntBASIC0.63□□□□□ -2.31
FOXA2Q9Y261 RNY3P15-201ENST00000516297 97 ntBASIC0.63□□□□□ -2.31
FOXA2Q9Y261 AC011195.1-201ENST00000578177 177 ntBASIC0.63□□□□□ -2.31
FOXA2Q9Y261 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.63□□□□□ -2.31
FOXA2Q9Y261 MIR6866-201ENST00000638146 69 ntBASIC0.63□□□□□ -2.31
FOXA2Q9Y261 RNU6-1272P-201ENST00000362776 107 ntBASIC0.62□□□□□ -2.31
FOXA2Q9Y261 Y_RNA.61-201ENST00000362835 102 ntBASIC0.62□□□□□ -2.31
FOXA2Q9Y261 Y_RNA.105-201ENST00000363182 111 ntBASIC0.62□□□□□ -2.31
FOXA2Q9Y261 SNORD114-22-201ENST00000365423 72 ntBASIC0.62□□□□□ -2.31
FOXA2Q9Y261 SNORA22B-201ENST00000383876 138 ntBASIC0.62□□□□□ -2.31
FOXA2Q9Y261 Y_RNA.535-201ENST00000384612 99 ntBASIC0.62□□□□□ -2.31
FOXA2Q9Y261 MT-TN-201ENST00000387400 73 ntBASIC0.62□□□□□ -2.31
FOXA2Q9Y261 RNU1-119P-201ENST00000391122 165 ntBASIC0.62□□□□□ -2.31
FOXA2Q9Y261 AC004941.2-201ENST00000427009 228 ntBASIC0.62□□□□□ -2.31
FOXA2Q9Y261 RNU7-67P-201ENST00000459003 62 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms