Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 Y_RNA.455-201ENST00000384230 98 ntBASIC1.73□□□□□ -2.13
SHROOM4Q9ULL8 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
SHROOM4Q9ULL8 SNORA53-201ENST00000391141 249 ntBASIC1.73□□□□□ -2.13
SHROOM4Q9ULL8 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.73□□□□□ -2.13
SHROOM4Q9ULL8 RAC1P9-201ENST00000604990 392 ntBASIC1.73□□□□□ -2.13
SHROOM4Q9ULL8 MIR19B1-201ENST00000384829 87 ntBASIC1.72□□□□□ -2.13
SHROOM4Q9ULL8 HSPE1P25-201ENST00000455484 251 ntBASIC1.72□□□□□ -2.13
SHROOM4Q9ULL8 Y_RNA.711-201ENST00000516993 102 ntBASIC1.72□□□□□ -2.13
SHROOM4Q9ULL8 RPL23AP91-201ENST00000569211 455 ntBASIC1.72□□□□□ -2.13
SHROOM4Q9ULL8 AC037487.3-201ENST00000606668 112 ntBASIC1.72□□□□□ -2.13
SHROOM4Q9ULL8 AL109933.3-201ENST00000619095 188 ntBASIC1.72□□□□□ -2.13
SHROOM4Q9ULL8 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
SHROOM4Q9ULL8 RNU6-1048P-201ENST00000364054 107 ntBASIC1.71□□□□□ -2.14
SHROOM4Q9ULL8 RNU2-14P-201ENST00000411053 191 ntBASIC1.71□□□□□ -2.14
SHROOM4Q9ULL8 AC063976.4-201ENST00000421971 163 ntBASIC1.71□□□□□ -2.14
SHROOM4Q9ULL8 AC002429.1-201ENST00000437672 148 ntBASIC1.71□□□□□ -2.14
SHROOM4Q9ULL8 MIR4764-201ENST00000580680 88 ntBASIC1.71□□□□□ -2.14
SHROOM4Q9ULL8 MIR3192-201ENST00000584920 77 ntBASIC1.71□□□□□ -2.14
SHROOM4Q9ULL8 AC134026.1-201ENST00000623249 2239 ntBASIC1.71□□□□□ -2.14
SHROOM4Q9ULL8 MTCO2P33-201ENST00000402100 465 ntBASIC1.7□□□□□ -2.14
SHROOM4Q9ULL8 AC245047.8-201ENST00000456455 284 ntBASIC1.7□□□□□ -2.14
SHROOM4Q9ULL8 MIR924-201ENST00000638017 53 ntBASIC1.7□□□□□ -2.14
SHROOM4Q9ULL8 Y_RNA.85-201ENST00000363014 111 ntBASIC1.69□□□□□ -2.14
SHROOM4Q9ULL8 Y_RNA.138-201ENST00000363462 102 ntBASIC1.69□□□□□ -2.14
SHROOM4Q9ULL8 Y_RNA.581-201ENST00000391017 97 ntBASIC1.69□□□□□ -2.14
SHROOM4Q9ULL8 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.69□□□□□ -2.14
SHROOM4Q9ULL8 RNU7-90P-201ENST00000459216 62 ntBASIC1.69□□□□□ -2.14
SHROOM4Q9ULL8 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.69□□□□□ -2.14
SHROOM4Q9ULL8 AL355297.3-201ENST00000604082 446 ntBASIC1.69□□□□□ -2.14
SHROOM4Q9ULL8 Y_RNA.418-201ENST00000384029 102 ntBASIC1.69□□□□□ -2.14
SHROOM4Q9ULL8 ELOCP20-201ENST00000422460 345 ntBASIC1.69□□□□□ -2.14
SHROOM4Q9ULL8 SNORD123-201ENST00000459473 70 ntBASIC1.69□□□□□ -2.14
SHROOM4Q9ULL8 OR2A41P-201ENST00000473586 105 ntBASIC1.69□□□□□ -2.14
SHROOM4Q9ULL8 HSPE1P19-201ENST00000603327 295 ntBASIC1.69□□□□□ -2.14
SHROOM4Q9ULL8 AL391903.3-201ENST00000612158 163 ntBASIC1.69□□□□□ -2.14
SHROOM4Q9ULL8 AC012676.2-201ENST00000619258 186 ntBASIC1.69□□□□□ -2.14
SHROOM4Q9ULL8 Y_RNA.363-201ENST00000365529 113 ntBASIC1.68□□□□□ -2.14
SHROOM4Q9ULL8 SNORA26.5-201ENST00000391215 123 ntBASIC1.68□□□□□ -2.14
SHROOM4Q9ULL8 MIR936-201ENST00000401264 98 ntBASIC1.68□□□□□ -2.14
SHROOM4Q9ULL8 MRPS35P2-201ENST00000508242 191 ntBASIC1.68□□□□□ -2.14
SHROOM4Q9ULL8 RNU2-31P-201ENST00000516954 155 ntBASIC1.68□□□□□ -2.14
SHROOM4Q9ULL8 Y_RNA.19-201ENST00000362462 99 ntBASIC1.67□□□□□ -2.14
SHROOM4Q9ULL8 RNU6-326P-201ENST00000365480 107 ntBASIC1.67□□□□□ -2.14
SHROOM4Q9ULL8 AC131281.1-201ENST00000522984 164 ntBASIC1.67□□□□□ -2.14
SHROOM4Q9ULL8 RNA5SP264-201ENST00000363115 107 ntBASIC1.66□□□□□ -2.14
SHROOM4Q9ULL8 RNU6-1205P-201ENST00000363625 106 ntBASIC1.66□□□□□ -2.14
SHROOM4Q9ULL8 Y_RNA.214-201ENST00000364201 112 ntBASIC1.66□□□□□ -2.14
SHROOM4Q9ULL8 Y_RNA.527-201ENST00000384573 102 ntBASIC1.66□□□□□ -2.14
SHROOM4Q9ULL8 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.66□□□□□ -2.14
SHROOM4Q9ULL8 MTCO1P5-201ENST00000433573 344 ntBASIC1.66□□□□□ -2.14
SHROOM4Q9ULL8 Y_RNA.701-201ENST00000516812 110 ntBASIC1.66□□□□□ -2.14
SHROOM4Q9ULL8 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.66□□□□□ -2.14
SHROOM4Q9ULL8 Y_RNA.394-201ENST00000383942 103 ntBASIC1.65□□□□□ -2.15
SHROOM4Q9ULL8 MIR200A-201ENST00000384875 90 ntBASIC1.65□□□□□ -2.15
SHROOM4Q9ULL8 RPS26P48-201ENST00000491713 339 ntBASIC1.65□□□□□ -2.15
SHROOM4Q9ULL8 UBL5P1-201ENST00000507979 193 ntBASIC1.65□□□□□ -2.15
SHROOM4Q9ULL8 RNU6-830P-201ENST00000516353 107 ntBASIC1.65□□□□□ -2.15
SHROOM4Q9ULL8 AC020661.2-201ENST00000560114 134 ntBASIC1.65□□□□□ -2.15
SHROOM4Q9ULL8 MIR8087-201ENST00000612745 78 ntBASIC1.65□□□□□ -2.15
SHROOM4Q9ULL8 SNORD114-24-201ENST00000365029 72 ntBASIC1.64□□□□□ -2.15
SHROOM4Q9ULL8 RNU6-102P-201ENST00000384485 104 ntBASIC1.64□□□□□ -2.15
SHROOM4Q9ULL8 MIR1278-201ENST00000408753 81 ntBASIC1.64□□□□□ -2.15
SHROOM4Q9ULL8 RNU7-21P-201ENST00000459430 62 ntBASIC1.64□□□□□ -2.15
SHROOM4Q9ULL8 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.64□□□□□ -2.15
SHROOM4Q9ULL8 AC036111.3-201ENST00000526389 112 ntBASIC1.64□□□□□ -2.15
SHROOM4Q9ULL8 MIR4711-201ENST00000578274 70 ntBASIC1.64□□□□□ -2.15
SHROOM4Q9ULL8 Pinc.1-201ENST00000616452 154 ntBASIC1.64□□□□□ -2.15
SHROOM4Q9ULL8 AC013791.1-201ENST00000616619 62 ntBASIC1.64□□□□□ -2.15
SHROOM4Q9ULL8 Y_RNA.210-201ENST00000364161 110 ntBASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 Y_RNA.276-201ENST00000364732 109 ntBASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 RNU6-290P-201ENST00000365212 101 ntBASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 RNU6-763P-201ENST00000390865 106 ntBASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 AC098869.1-201ENST00000481627 292 ntBASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 MIR5692C2-201ENST00000577959 77 ntBASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 AC113195.1-201ENST00000579952 141 ntBASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 MIR548AR-201ENST00000582191 57 ntBASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 AC008507.4-201ENST00000585464 127 ntBASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 AC044792.1-201ENST00000593294 196 ntBASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 Y_RNA.11-201ENST00000362375 109 ntBASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 RNU6-121P-201ENST00000410525 99 ntBASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 MIR4661-201ENST00000582720 75 ntBASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 AC005357.1-201ENST00000588399 301 ntBASIC1.63□□□□□ -2.15
SHROOM4Q9ULL8 RNU6-268P-201ENST00000364174 107 ntBASIC1.62□□□□□ -2.15
SHROOM4Q9ULL8 RNU6-514P-201ENST00000384208 107 ntBASIC1.62□□□□□ -2.15
SHROOM4Q9ULL8 RPS29P28-201ENST00000446439 141 ntBASIC1.62□□□□□ -2.15
SHROOM4Q9ULL8 NDUFA4P2-201ENST00000489989 244 ntBASIC1.62□□□□□ -2.15
SHROOM4Q9ULL8 Y_RNA.14-201ENST00000362415 103 ntBASIC1.61□□□□□ -2.15
SHROOM4Q9ULL8 MRPL35P3-201ENST00000421557 364 ntBASIC1.61□□□□□ -2.15
SHROOM4Q9ULL8 SNORA25.1-201ENST00000362326 128 ntBASIC1.6□□□□□ -2.15
SHROOM4Q9ULL8 RNU6-716P-201ENST00000365621 103 ntBASIC1.6□□□□□ -2.15
SHROOM4Q9ULL8 RNA5SP496-201ENST00000391240 109 ntBASIC1.6□□□□□ -2.15
SHROOM4Q9ULL8 U8.17-201ENST00000391292 132 ntBASIC1.6□□□□□ -2.15
SHROOM4Q9ULL8 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.6□□□□□ -2.15
SHROOM4Q9ULL8 snoU13.25-201ENST00000458945 104 ntBASIC1.6□□□□□ -2.15
SHROOM4Q9ULL8 Y_RNA.637-201ENST00000459424 114 ntBASIC1.6□□□□□ -2.15
SHROOM4Q9ULL8 RNU7-41P-201ENST00000515917 61 ntBASIC1.6□□□□□ -2.15
SHROOM4Q9ULL8 SNORA27.4-201ENST00000516650 95 ntBASIC1.6□□□□□ -2.15
SHROOM4Q9ULL8 RNU11-2P-201ENST00000516898 142 ntBASIC1.6□□□□□ -2.15
SHROOM4Q9ULL8 AP003733.2-201ENST00000529409 171 ntBASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms