Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
DDX28Q9NUL7 RNU6-102P-201ENST00000384485 104 ntBASIC0.8□□□□□ -2.28
DDX28Q9NUL7 MIR532-201ENST00000385025 91 ntBASIC0.8□□□□□ -2.28
DDX28Q9NUL7 U8.17-201ENST00000391292 132 ntBASIC0.8□□□□□ -2.28
DDX28Q9NUL7 MTCO2P33-201ENST00000402100 465 ntBASIC0.8□□□□□ -2.28
DDX28Q9NUL7 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.8□□□□□ -2.28
DDX28Q9NUL7 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.8□□□□□ -2.28
DDX28Q9NUL7 SNORD11-201ENST00000459124 84 ntBASIC0.8□□□□□ -2.28
DDX28Q9NUL7 RNA5SP255-201ENST00000516370 107 ntBASIC0.8□□□□□ -2.28
DDX28Q9NUL7 AC131055.1-201ENST00000584626 316 ntBASIC0.8□□□□□ -2.28
DDX28Q9NUL7 AC006441.5-201ENST00000612680 209 ntBASIC0.8□□□□□ -2.28
DDX28Q9NUL7 PVT1_3.1-201ENST00000620853 95 ntBASIC0.8□□□□□ -2.28
DDX28Q9NUL7 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
DDX28Q9NUL7 RNU6-450P-201ENST00000364654 107 ntBASIC0.79□□□□□ -2.28
DDX28Q9NUL7 Y_RNA.370-201ENST00000365589 108 ntBASIC0.79□□□□□ -2.28
DDX28Q9NUL7 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
DDX28Q9NUL7 RNU6-763P-201ENST00000390865 106 ntBASIC0.79□□□□□ -2.28
DDX28Q9NUL7 SNORD28B-201ENST00000390993 75 ntBASIC0.79□□□□□ -2.28
DDX28Q9NUL7 RNU2-64P-201ENST00000411315 191 ntBASIC0.79□□□□□ -2.28
DDX28Q9NUL7 RPS3AP1-201ENST00000413190 320 ntBASIC0.79□□□□□ -2.28
DDX28Q9NUL7 AL392103.1-201ENST00000447000 198 ntBASIC0.79□□□□□ -2.28
DDX28Q9NUL7 AC023449.1-201ENST00000454464 154 ntBASIC0.79□□□□□ -2.28
DDX28Q9NUL7 PSMC1P5-201ENST00000512850 177 ntBASIC0.79□□□□□ -2.28
DDX28Q9NUL7 AC109810.1-201ENST00000534066 224 ntBASIC0.79□□□□□ -2.28
DDX28Q9NUL7 AC106800.4-201ENST00000614905 153 ntBASIC0.79□□□□□ -2.28
DDX28Q9NUL7 RNU6-1205P-201ENST00000363625 106 ntBASIC0.78□□□□□ -2.28
DDX28Q9NUL7 SNORD114-2-201ENST00000363953 78 ntBASIC0.78□□□□□ -2.28
DDX28Q9NUL7 RNU6-867P-201ENST00000364956 107 ntBASIC0.78□□□□□ -2.28
DDX28Q9NUL7 MIR608-201ENST00000384820 100 ntBASIC0.78□□□□□ -2.28
DDX28Q9NUL7 SNORD72-201ENST00000390994 80 ntBASIC0.78□□□□□ -2.28
DDX28Q9NUL7 Y_RNA.581-201ENST00000391017 97 ntBASIC0.78□□□□□ -2.28
DDX28Q9NUL7 AL603910.2-201ENST00000407268 136 ntBASIC0.78□□□□□ -2.28
DDX28Q9NUL7 MTCO1P5-201ENST00000433573 344 ntBASIC0.78□□□□□ -2.28
DDX28Q9NUL7 MTND4LP30-201ENST00000454092 297 ntBASIC0.78□□□□□ -2.28
DDX28Q9NUL7 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.78□□□□□ -2.28
DDX28Q9NUL7 MRPS35P2-201ENST00000508242 191 ntBASIC0.78□□□□□ -2.28
DDX28Q9NUL7 RNU6-197P-201ENST00000516680 100 ntBASIC0.78□□□□□ -2.28
DDX28Q9NUL7 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.78□□□□□ -2.28
DDX28Q9NUL7 AC023827.1-201ENST00000569247 97 ntBASIC0.78□□□□□ -2.28
DDX28Q9NUL7 AC134503.1-201ENST00000633048 54 ntBASIC0.78□□□□□ -2.28
DDX28Q9NUL7 MTND4P29-201ENST00000503122 1372 ntBASIC0.78□□□□□ -2.28
DDX28Q9NUL7 RNU5E-4P-201ENST00000364931 120 ntBASIC0.77□□□□□ -2.29
DDX28Q9NUL7 SNORA1.2-201ENST00000365189 134 ntBASIC0.77□□□□□ -2.29
DDX28Q9NUL7 MIR1302-7-201ENST00000408841 72 ntBASIC0.77□□□□□ -2.29
DDX28Q9NUL7 AL606490.4-201ENST00000423117 127 ntBASIC0.77□□□□□ -2.29
DDX28Q9NUL7 SNORA40.15-201ENST00000516884 107 ntBASIC0.77□□□□□ -2.29
DDX28Q9NUL7 AL512605.2-201ENST00000592972 256 ntBASIC0.77□□□□□ -2.29
DDX28Q9NUL7 RNU6-770P-201ENST00000363929 105 ntBASIC0.76□□□□□ -2.29
DDX28Q9NUL7 RNU6-290P-201ENST00000365212 101 ntBASIC0.76□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.537-201ENST00000384626 109 ntBASIC0.76□□□□□ -2.29
DDX28Q9NUL7 SNORD111-201ENST00000408139 94 ntBASIC0.76□□□□□ -2.29
DDX28Q9NUL7 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.76□□□□□ -2.29
DDX28Q9NUL7 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.76□□□□□ -2.29
DDX28Q9NUL7 U7.7-201ENST00000459276 60 ntBASIC0.76□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.637-201ENST00000459424 114 ntBASIC0.76□□□□□ -2.29
DDX28Q9NUL7 AC036111.3-201ENST00000526389 112 ntBASIC0.76□□□□□ -2.29
DDX28Q9NUL7 CYP3A137P-201ENST00000562436 69 ntBASIC0.76□□□□□ -2.29
DDX28Q9NUL7 FAM71BP1-201ENST00000604431 523 ntBASIC0.76□□□□□ -2.29
DDX28Q9NUL7 AC013791.1-201ENST00000616619 62 ntBASIC0.76□□□□□ -2.29
DDX28Q9NUL7 MIR6779-201ENST00000617283 64 ntBASIC0.76□□□□□ -2.29
DDX28Q9NUL7 HSBP1P2-201ENST00000299671 229 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.61-201ENST00000362835 102 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.105-201ENST00000363182 111 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.158-201ENST00000363651 101 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 RNU6-326P-201ENST00000365480 107 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 SNORA22B-201ENST00000383876 138 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.393-201ENST00000383936 102 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.535-201ENST00000384612 99 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 RNA5SP496-201ENST00000391240 109 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 RNU6-121P-201ENST00000410525 99 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 RNU2-31P-201ENST00000516954 155 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 RNU7-181P-201ENST00000517234 74 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.75□□□□□ -2.29
DDX28Q9NUL7 AC015726.2-201ENST00000620112 122 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 AC022140.2-201ENST00000623500 188 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 MIR6516-201ENST00000630554 81 ntBASIC0.75□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.214-201ENST00000364201 112 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 SNORD113.3-201ENST00000364630 78 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.276-201ENST00000364732 109 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 SNORA51.10-201ENST00000384418 136 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 MIR216A-201ENST00000385063 110 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 SNORA53-201ENST00000391141 249 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 ELOCP20-201ENST00000422460 345 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 SCARNA8-201ENST00000515924 131 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 RNU4-57P-201ENST00000515980 135 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 RNU6-1143P-201ENST00000516125 104 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.711-201ENST00000516993 102 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 MIR5692C2-201ENST00000577959 77 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 AC025627.3-201ENST00000582078 182 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 AL355297.3-201ENST00000604082 446 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 AC037487.3-201ENST00000606668 112 ntBASIC0.74□□□□□ -2.29
DDX28Q9NUL7 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.74□□□□□ -2.29
DDX28Q9NUL7 MIR373-201ENST00000362273 69 ntBASIC0.73□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.455-201ENST00000384230 98 ntBASIC0.73□□□□□ -2.29
DDX28Q9NUL7 MIR570-201ENST00000384917 97 ntBASIC0.73□□□□□ -2.29
DDX28Q9NUL7 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.73□□□□□ -2.29
DDX28Q9NUL7 MIR548P-201ENST00000408336 84 ntBASIC0.73□□□□□ -2.29
DDX28Q9NUL7 AL035398.1-201ENST00000430869 322 ntBASIC0.73□□□□□ -2.29
DDX28Q9NUL7 AC005534.2-201ENST00000431047 433 ntBASIC0.73□□□□□ -2.29
DDX28Q9NUL7 AC113410.1-201ENST00000505029 247 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 167.2 ms