Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
TRIM39Q9HCM9 MIR3945-201ENST00000581853 98 ntBASIC2.16□□□□□ -2.06
TRIM39Q9HCM9 AP001485.1-201ENST00000604799 199 ntBASIC2.16□□□□□ -2.06
TRIM39Q9HCM9 U8.2-201ENST00000363156 134 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 SNORD50.2-201ENST00000365465 70 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 Y_RNA.410-201ENST00000383992 113 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 Y_RNA.547-201ENST00000384654 119 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 MIR518F-201ENST00000384973 87 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 MIR624-201ENST00000385217 97 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 RNU6-588P-201ENST00000410281 105 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 AC004965.1-201ENST00000413033 213 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 AL445646.1-201ENST00000431784 216 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 AC093850.1-201ENST00000454121 251 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 RNU1-41P-201ENST00000516161 162 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 SNORA25.12-201ENST00000516202 82 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 RNU6-830P-201ENST00000516353 107 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 RNU1-48P-201ENST00000516400 162 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 DEFB122-202ENST00000569013 197 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 MIR3129-201ENST00000581095 76 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 AL627230.6-201ENST00000611129 280 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 MIR8074-201ENST00000615081 81 ntBASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
TRIM39Q9HCM9 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.14□□□□□ -2.07
TRIM39Q9HCM9 RNU6-203P-201ENST00000384038 104 ntBASIC2.14□□□□□ -2.07
TRIM39Q9HCM9 RNU6-187P-201ENST00000384139 106 ntBASIC2.14□□□□□ -2.07
TRIM39Q9HCM9 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
TRIM39Q9HCM9 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.14□□□□□ -2.07
TRIM39Q9HCM9 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.14□□□□□ -2.07
TRIM39Q9HCM9 AC087499.4-201ENST00000448505 178 ntBASIC2.14□□□□□ -2.07
TRIM39Q9HCM9 AC090255.1-201ENST00000495779 349 ntBASIC2.14□□□□□ -2.07
TRIM39Q9HCM9 MIR4648-201ENST00000580107 72 ntBASIC2.14□□□□□ -2.07
TRIM39Q9HCM9 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
TRIM39Q9HCM9 RNU6-1082P-201ENST00000364574 107 ntBASIC2.13□□□□□ -2.07
TRIM39Q9HCM9 MIR548A2-201ENST00000384956 97 ntBASIC2.13□□□□□ -2.07
TRIM39Q9HCM9 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
TRIM39Q9HCM9 Y_RNA.584-201ENST00000391090 114 ntBASIC2.13□□□□□ -2.07
TRIM39Q9HCM9 HMGN2P38-201ENST00000423806 265 ntBASIC2.13□□□□□ -2.07
TRIM39Q9HCM9 AC131055.1-201ENST00000584626 316 ntBASIC2.13□□□□□ -2.07
TRIM39Q9HCM9 MIR219B-201ENST00000637023 88 ntBASIC2.13□□□□□ -2.07
TRIM39Q9HCM9 AP000553.5-201ENST00000641933 54 ntBASIC2.13□□□□□ -2.07
TRIM39Q9HCM9 AL359851.1-201ENST00000569460 4997 ntBASIC2.12□□□□□ -2.07
TRIM39Q9HCM9 SNORA1-201ENST00000384107 130 ntBASIC2.12□□□□□ -2.07
TRIM39Q9HCM9 RNU6-439P-201ENST00000384188 106 ntBASIC2.12□□□□□ -2.07
TRIM39Q9HCM9 Y_RNA.497-201ENST00000384447 98 ntBASIC2.12□□□□□ -2.07
TRIM39Q9HCM9 MIR194-1-201ENST00000384892 85 ntBASIC2.12□□□□□ -2.07
TRIM39Q9HCM9 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.12□□□□□ -2.07
TRIM39Q9HCM9 TMSB4XP3-201ENST00000445144 114 ntBASIC2.12□□□□□ -2.07
TRIM39Q9HCM9 AC104435.1-201ENST00000483483 166 ntBASIC2.12□□□□□ -2.07
TRIM39Q9HCM9 RPS27P21-201ENST00000486977 252 ntBASIC2.12□□□□□ -2.07
TRIM39Q9HCM9 RNU6-322P-201ENST00000516010 103 ntBASIC2.12□□□□□ -2.07
TRIM39Q9HCM9 MIR5002-201ENST00000584713 97 ntBASIC2.12□□□□□ -2.07
TRIM39Q9HCM9 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
TRIM39Q9HCM9 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.12□□□□□ -2.07
TRIM39Q9HCM9 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
TRIM39Q9HCM9 Y_RNA.37-201ENST00000362606 108 ntBASIC2.11□□□□□ -2.07
TRIM39Q9HCM9 SNORA1.2-201ENST00000365189 134 ntBASIC2.11□□□□□ -2.07
TRIM39Q9HCM9 RNA5SP259-201ENST00000365541 109 ntBASIC2.11□□□□□ -2.07
TRIM39Q9HCM9 SNORD18B-201ENST00000365659 72 ntBASIC2.11□□□□□ -2.07
TRIM39Q9HCM9 RNU6-1189P-201ENST00000383958 107 ntBASIC2.11□□□□□ -2.07
TRIM39Q9HCM9 MIR513A1-201ENST00000385138 129 ntBASIC2.11□□□□□ -2.07
TRIM39Q9HCM9 MIR516B2-201ENST00000385190 85 ntBASIC2.11□□□□□ -2.07
TRIM39Q9HCM9 MIR569-201ENST00000385228 96 ntBASIC2.11□□□□□ -2.07
TRIM39Q9HCM9 RNU6-789P-201ENST00000517105 102 ntBASIC2.11□□□□□ -2.07
TRIM39Q9HCM9 SUMO2P16-201ENST00000519475 264 ntBASIC2.11□□□□□ -2.07
TRIM39Q9HCM9 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.11□□□□□ -2.07
TRIM39Q9HCM9 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
TRIM39Q9HCM9 RNU6-704P-201ENST00000364162 103 ntBASIC2.1□□□□□ -2.07
TRIM39Q9HCM9 SNORA2.2-201ENST00000365473 135 ntBASIC2.1□□□□□ -2.07
TRIM39Q9HCM9 SNORA64-201ENST00000384674 134 ntBASIC2.1□□□□□ -2.07
TRIM39Q9HCM9 Y_RNA.568-201ENST00000384742 113 ntBASIC2.1□□□□□ -2.07
TRIM39Q9HCM9 AL356379.1-201ENST00000414105 126 ntBASIC2.1□□□□□ -2.07
TRIM39Q9HCM9 AF228730.3-201ENST00000436691 102 ntBASIC2.1□□□□□ -2.07
TRIM39Q9HCM9 MTATP6P21-201ENST00000440681 189 ntBASIC2.1□□□□□ -2.07
TRIM39Q9HCM9 RNU6-426P-201ENST00000516464 97 ntBASIC2.1□□□□□ -2.07
TRIM39Q9HCM9 AC002984.1-201ENST00000591692 448 ntBASIC2.1□□□□□ -2.07
TRIM39Q9HCM9 AC091895.1-201ENST00000624494 256 ntBASIC2.1□□□□□ -2.07
TRIM39Q9HCM9 MIR30A-201ENST00000385092 71 ntBASIC2.09□□□□□ -2.07
TRIM39Q9HCM9 SNORD77.3-201ENST00000391113 65 ntBASIC2.09□□□□□ -2.07
TRIM39Q9HCM9 AL161935.2-201ENST00000414627 60 ntBASIC2.09□□□□□ -2.07
TRIM39Q9HCM9 HMGN2P19-201ENST00000425149 265 ntBASIC2.09□□□□□ -2.07
TRIM39Q9HCM9 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.09□□□□□ -2.07
TRIM39Q9HCM9 AC107297.1-201ENST00000459991 176 ntBASIC2.09□□□□□ -2.07
TRIM39Q9HCM9 AP003484.1-201ENST00000530974 250 ntBASIC2.09□□□□□ -2.07
TRIM39Q9HCM9 FAM106DP-201ENST00000586416 501 ntBASIC2.09□□□□□ -2.07
TRIM39Q9HCM9 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.09□□□□□ -2.07
TRIM39Q9HCM9 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.09□□□□□ -2.07
TRIM39Q9HCM9 RNU6-457P-201ENST00000363999 107 ntBASIC2.08□□□□□ -2.08
TRIM39Q9HCM9 RNU6-1336P-201ENST00000383886 109 ntBASIC2.08□□□□□ -2.08
TRIM39Q9HCM9 SNORA67.3-201ENST00000384366 140 ntBASIC2.08□□□□□ -2.08
TRIM39Q9HCM9 AL023284.1-201ENST00000403956 276 ntBASIC2.08□□□□□ -2.08
TRIM39Q9HCM9 AL021397.1-201ENST00000451806 248 ntBASIC2.08□□□□□ -2.08
TRIM39Q9HCM9 AC092991.1-201ENST00000477176 376 ntBASIC2.08□□□□□ -2.08
TRIM39Q9HCM9 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.08□□□□□ -2.08
TRIM39Q9HCM9 MIR5197-201ENST00000583721 112 ntBASIC2.08□□□□□ -2.08
TRIM39Q9HCM9 MIR4448-201ENST00000584360 86 ntBASIC2.08□□□□□ -2.08
TRIM39Q9HCM9 AC106754.2-201ENST00000623006 233 ntBASIC2.08□□□□□ -2.08
TRIM39Q9HCM9 AC010332.2-201ENST00000613083 1904 ntBASIC2.08□□□□□ -2.08
TRIM39Q9HCM9 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 194.7 ms