Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL512310.8-201ENST00000550183 120 ntBASIC1.11□□□□□ -2.23
CCDC28BQ9BUN5 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.11□□□□□ -2.23
CCDC28BQ9BUN5 MIR3664-201ENST00000579074 99 ntBASIC1.11□□□□□ -2.23
CCDC28BQ9BUN5 MIR4662B-201ENST00000579498 81 ntBASIC1.11□□□□□ -2.23
CCDC28BQ9BUN5 MIR4303-201ENST00000581299 66 ntBASIC1.11□□□□□ -2.23
CCDC28BQ9BUN5 MIR4524B-201ENST00000581569 115 ntBASIC1.11□□□□□ -2.23
CCDC28BQ9BUN5 AL365265.1-201ENST00000621045 234 ntBASIC1.11□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.262-201ENST00000364641 102 ntBASIC1.1□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.292-201ENST00000364904 97 ntBASIC1.1□□□□□ -2.23
CCDC28BQ9BUN5 RNY3P5-201ENST00000384127 102 ntBASIC1.1□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.447-201ENST00000384184 113 ntBASIC1.1□□□□□ -2.23
CCDC28BQ9BUN5 RNU6-574P-201ENST00000384265 107 ntBASIC1.1□□□□□ -2.23
CCDC28BQ9BUN5 SNORD38C-201ENST00000384381 69 ntBASIC1.1□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.618-201ENST00000410949 107 ntBASIC1.1□□□□□ -2.23
CCDC28BQ9BUN5 SNRPGP14-201ENST00000435400 219 ntBASIC1.1□□□□□ -2.23
CCDC28BQ9BUN5 MTND1P19-201ENST00000511780 315 ntBASIC1.1□□□□□ -2.23
CCDC28BQ9BUN5 AC090142.3-201ENST00000519012 385 ntBASIC1.1□□□□□ -2.23
CCDC28BQ9BUN5 MIR4295-201ENST00000585286 85 ntBASIC1.1□□□□□ -2.23
CCDC28BQ9BUN5 AC011921.3-201ENST00000605540 361 ntBASIC1.1□□□□□ -2.23
CCDC28BQ9BUN5 AC006441.5-201ENST00000612680 209 ntBASIC1.1□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.24-201ENST00000362508 103 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.76-201ENST00000362931 109 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 RNU6-653P-201ENST00000363074 106 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.229-201ENST00000364347 113 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 RNU4-10P-201ENST00000364383 140 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 SNORA20.1-201ENST00000364790 130 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.307-201ENST00000365022 117 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.401-201ENST00000383965 117 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.539-201ENST00000384635 107 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 RNU2-55P-201ENST00000411146 174 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 SNORD77.4-201ENST00000516158 81 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 RNU4-71P-201ENST00000516258 113 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.673-201ENST00000516306 88 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 RNU6-830P-201ENST00000516353 107 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 RNU7-149P-201ENST00000516739 59 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 MIR4421-201ENST00000578133 69 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 MIR3128-201ENST00000581957 66 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 FAM106DP-201ENST00000586416 501 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 AL049861.1-201ENST00000603130 150 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 AL391903.3-201ENST00000612158 163 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.09□□□□□ -2.23
CCDC28BQ9BUN5 SNORD27-201ENST00000363981 72 ntBASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 RNU6-268P-201ENST00000364174 107 ntBASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 RNY1-201ENST00000364228 113 ntBASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 SNORA25.8-201ENST00000364831 128 ntBASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 RNY4P28-201ENST00000365281 93 ntBASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 Y_RNA.489-201ENST00000384410 101 ntBASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 MIR616-201ENST00000385293 97 ntBASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 SNORD41-201ENST00000386967 70 ntBASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 MT-TG-201ENST00000387429 68 ntBASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 AC245047.8-201ENST00000456455 284 ntBASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 RNU6-922P-201ENST00000516753 99 ntBASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 MIR3124-201ENST00000582636 67 ntBASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
CCDC28BQ9BUN5 RNU4-17P-201ENST00000365598 141 ntBASIC1.07□□□□□ -2.24
CCDC28BQ9BUN5 SNORA70.7-201ENST00000384159 133 ntBASIC1.07□□□□□ -2.24
CCDC28BQ9BUN5 Y_RNA.477-201ENST00000384352 108 ntBASIC1.07□□□□□ -2.24
CCDC28BQ9BUN5 SNORD72-201ENST00000390994 80 ntBASIC1.07□□□□□ -2.24
CCDC28BQ9BUN5 RNU6-1228P-201ENST00000391014 107 ntBASIC1.07□□□□□ -2.24
CCDC28BQ9BUN5 SNORD116-28-201ENST00000516123 91 ntBASIC1.07□□□□□ -2.24
CCDC28BQ9BUN5 RN7SKP164-201ENST00000516138 266 ntBASIC1.07□□□□□ -2.24
CCDC28BQ9BUN5 SNORA74.3-201ENST00000517108 154 ntBASIC1.07□□□□□ -2.24
CCDC28BQ9BUN5 DNAJC19P9-201ENST00000555084 351 ntBASIC1.07□□□□□ -2.24
CCDC28BQ9BUN5 AC015712.3-201ENST00000559380 164 ntBASIC1.07□□□□□ -2.24
CCDC28BQ9BUN5 HSPE1P19-201ENST00000603327 295 ntBASIC1.07□□□□□ -2.24
CCDC28BQ9BUN5 Pinc.1-201ENST00000616452 154 ntBASIC1.07□□□□□ -2.24
CCDC28BQ9BUN5 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
CCDC28BQ9BUN5 Y_RNA.60-201ENST00000362831 98 ntBASIC1.06□□□□□ -2.24
CCDC28BQ9BUN5 Y_RNA.65-201ENST00000362846 100 ntBASIC1.06□□□□□ -2.24
CCDC28BQ9BUN5 RNU6-103P-201ENST00000363686 107 ntBASIC1.06□□□□□ -2.24
CCDC28BQ9BUN5 Y_RNA.269-201ENST00000364685 89 ntBASIC1.06□□□□□ -2.24
CCDC28BQ9BUN5 MIR516B2-201ENST00000385190 85 ntBASIC1.06□□□□□ -2.24
CCDC28BQ9BUN5 Y_RNA.587-201ENST00000391210 103 ntBASIC1.06□□□□□ -2.24
CCDC28BQ9BUN5 RNU6-381P-201ENST00000391259 108 ntBASIC1.06□□□□□ -2.24
CCDC28BQ9BUN5 SNORA26-201ENST00000391286 122 ntBASIC1.06□□□□□ -2.24
CCDC28BQ9BUN5 Y_RNA.680-201ENST00000516441 93 ntBASIC1.06□□□□□ -2.24
CCDC28BQ9BUN5 AL353997.5-201ENST00000618886 171 ntBASIC1.06□□□□□ -2.24
CCDC28BQ9BUN5 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 snoU2_19.4-201ENST00000364329 80 ntBASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 Y_RNA.572-201ENST00000384757 98 ntBASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 RNU6-482P-201ENST00000391068 107 ntBASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 Y_RNA.626-201ENST00000411288 95 ntBASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 RPL39P39-201ENST00000455840 151 ntBASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 RNU7-43P-201ENST00000516554 64 ntBASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 RN7SKP88-201ENST00000516847 250 ntBASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 RNU6-165P-201ENST00000517170 99 ntBASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 CYP3A52P-201ENST00000563326 91 ntBASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 7SK.8-201ENST00000612110 250 ntBASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 7SK.11-201ENST00000615477 250 ntBASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 7SK.13-201ENST00000622040 250 ntBASIC1.05□□□□□ -2.24
CCDC28BQ9BUN5 Y_RNA.188-201ENST00000363952 111 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 196.4 ms