Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 Y_RNA.47-201ENST00000362697 108 ntBASIC1.16□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.162-201ENST00000363683 102 ntBASIC1.16□□□□□ -2.22
CCDC3Q9BQI4 RNU6-1289P-201ENST00000384431 106 ntBASIC1.16□□□□□ -2.22
CCDC3Q9BQI4 MT-TW-201ENST00000387382 68 ntBASIC1.16□□□□□ -2.22
CCDC3Q9BQI4 MIR1278-201ENST00000408753 81 ntBASIC1.16□□□□□ -2.22
CCDC3Q9BQI4 BTF3P11-201ENST00000426582 477 ntBASIC1.16□□□□□ -2.22
CCDC3Q9BQI4 AC023449.1-201ENST00000454464 154 ntBASIC1.16□□□□□ -2.22
CCDC3Q9BQI4 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.16□□□□□ -2.22
CCDC3Q9BQI4 RNU6-327P-201ENST00000516270 127 ntBASIC1.16□□□□□ -2.22
CCDC3Q9BQI4 AC068338.1-201ENST00000565567 176 ntBASIC1.16□□□□□ -2.22
CCDC3Q9BQI4 MIR4724-201ENST00000579485 89 ntBASIC1.16□□□□□ -2.22
CCDC3Q9BQI4 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.16□□□□□ -2.22
CCDC3Q9BQI4 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.16□□□□□ -2.22
CCDC3Q9BQI4 RNU6-1138P-201ENST00000365359 106 ntBASIC1.15□□□□□ -2.23
CCDC3Q9BQI4 RNU6-211P-201ENST00000384047 107 ntBASIC1.15□□□□□ -2.23
CCDC3Q9BQI4 Y_RNA.461-201ENST00000384263 103 ntBASIC1.15□□□□□ -2.23
CCDC3Q9BQI4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC3Q9BQI4 MTCYBP9-201ENST00000431021 303 ntBASIC1.15□□□□□ -2.23
CCDC3Q9BQI4 RPS29P29-201ENST00000456396 171 ntBASIC1.15□□□□□ -2.23
CCDC3Q9BQI4 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.15□□□□□ -2.23
CCDC3Q9BQI4 RNA5SP220-201ENST00000516298 104 ntBASIC1.15□□□□□ -2.23
CCDC3Q9BQI4 RNU6-126P-201ENST00000516685 103 ntBASIC1.15□□□□□ -2.23
CCDC3Q9BQI4 AC019288.1-201ENST00000557918 224 ntBASIC1.15□□□□□ -2.23
CCDC3Q9BQI4 Y_RNA.802-201ENST00000614892 130 ntBASIC1.15□□□□□ -2.23
CCDC3Q9BQI4 MIR6734-201ENST00000621166 68 ntBASIC1.15□□□□□ -2.23
CCDC3Q9BQI4 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 RNA5SP327-201ENST00000362494 101 ntBASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 RNU6-238P-201ENST00000363313 106 ntBASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 RNU1-93P-201ENST00000364704 169 ntBASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 Y_RNA.352-201ENST00000365439 102 ntBASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 RNU6-42P-201ENST00000384165 107 ntBASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 SNORD38C-201ENST00000384381 69 ntBASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 MTND2P23-201ENST00000422990 651 ntBASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 RPL39P39-201ENST00000455840 151 ntBASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 AL133373.1-201ENST00000497098 94 ntBASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 RNU7-43P-201ENST00000516554 64 ntBASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 SCARNA24.2-201ENST00000516968 130 ntBASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 MIR4662B-201ENST00000579498 81 ntBASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 uc_338.4-201ENST00000616635 176 ntBASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
CCDC3Q9BQI4 AC068700.1-201ENST00000565862 3754 ntBASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 MIR367-201ENST00000362299 68 ntBASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 Y_RNA.14-201ENST00000362415 103 ntBASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 RNU6-268P-201ENST00000364174 107 ntBASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 RNU6-740P-201ENST00000364734 105 ntBASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 Y_RNA.483-201ENST00000384380 101 ntBASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 Y_RNA.512-201ENST00000384518 102 ntBASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 RNU6-939P-201ENST00000384634 107 ntBASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 MIR626-201ENST00000385032 94 ntBASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 AL603910.2-201ENST00000407268 136 ntBASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 SNORA31.4-201ENST00000516049 129 ntBASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 RN7SKP179-201ENST00000516126 217 ntBASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 MIR4295-201ENST00000585286 85 ntBASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 RMST_2.1-201ENST00000617263 136 ntBASIC1.13□□□□□ -2.23
CCDC3Q9BQI4 RNY3P5-201ENST00000384127 102 ntBASIC1.12□□□□□ -2.23
CCDC3Q9BQI4 SNORA8.3-201ENST00000384679 139 ntBASIC1.12□□□□□ -2.23
CCDC3Q9BQI4 Y_RNA.562-201ENST00000384695 113 ntBASIC1.12□□□□□ -2.23
CCDC3Q9BQI4 SNORD12-201ENST00000391002 90 ntBASIC1.12□□□□□ -2.23
CCDC3Q9BQI4 AC245047.7-201ENST00000440265 293 ntBASIC1.12□□□□□ -2.23
CCDC3Q9BQI4 AC087343.1-201ENST00000477341 475 ntBASIC1.12□□□□□ -2.23
CCDC3Q9BQI4 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.12□□□□□ -2.23
CCDC3Q9BQI4 SNORD116-28-201ENST00000516123 91 ntBASIC1.12□□□□□ -2.23
CCDC3Q9BQI4 SNORD77.4-201ENST00000516158 81 ntBASIC1.12□□□□□ -2.23
CCDC3Q9BQI4 AC090821.2-201ENST00000523552 176 ntBASIC1.12□□□□□ -2.23
CCDC3Q9BQI4 PRELID3BP2-201ENST00000605362 201 ntBASIC1.12□□□□□ -2.23
CCDC3Q9BQI4 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC3Q9BQI4 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
CCDC3Q9BQI4 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.12□□□□□ -2.23
CCDC3Q9BQI4 RNU6-1309P-201ENST00000363305 108 ntBASIC1.11□□□□□ -2.23
CCDC3Q9BQI4 Y_RNA.293-201ENST00000364908 93 ntBASIC1.11□□□□□ -2.23
CCDC3Q9BQI4 MIR520E-201ENST00000384867 87 ntBASIC1.11□□□□□ -2.23
CCDC3Q9BQI4 SNORD58.1-201ENST00000391313 66 ntBASIC1.11□□□□□ -2.23
CCDC3Q9BQI4 MIR1302-3-201ENST00000408128 138 ntBASIC1.11□□□□□ -2.23
CCDC3Q9BQI4 RNU2-55P-201ENST00000411146 174 ntBASIC1.11□□□□□ -2.23
CCDC3Q9BQI4 AC245047.8-201ENST00000456455 284 ntBASIC1.11□□□□□ -2.23
CCDC3Q9BQI4 SNORD127-201ENST00000458892 86 ntBASIC1.11□□□□□ -2.23
CCDC3Q9BQI4 Pinc.1-201ENST00000616452 154 ntBASIC1.11□□□□□ -2.23
CCDC3Q9BQI4 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.11□□□□□ -2.23
CCDC3Q9BQI4 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 Y_RNA.288-201ENST00000364854 92 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 Y_RNA.304-201ENST00000365011 112 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 Y_RNA.396-201ENST00000383949 103 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 MIR618-201ENST00000385287 98 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 MIR802-201ENST00000390235 94 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 SNORD72-201ENST00000390994 80 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 MIR548H3-201ENST00000408771 118 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 RNU6-383P-201ENST00000410864 94 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 SNORD123-201ENST00000459473 70 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 Y_RNA.668-201ENST00000516233 93 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 SNORD111.1-201ENST00000516421 86 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 AC100767.1-201ENST00000528178 123 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 AP003716.2-201ENST00000528260 108 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 AL096861.1-201ENST00000610899 123 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 AL391903.3-201ENST00000612158 163 ntBASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 471 ms