Protein–RNA interactions for Protein: Q9BQ90

KLHDC3, Kelch domain-containing protein 3, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3Q9BQ90 RNU6-764P-201ENST00000516396 105 ntBASIC0.61□□□□□ -2.31
KLHDC3Q9BQ90 RNU6-1110P-201ENST00000516462 101 ntBASIC0.61□□□□□ -2.31
KLHDC3Q9BQ90 MIR2115-201ENST00000516657 100 ntBASIC0.61□□□□□ -2.31
KLHDC3Q9BQ90 Y_RNA.721-201ENST00000517207 102 ntBASIC0.61□□□□□ -2.31
KLHDC3Q9BQ90 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.61□□□□□ -2.31
KLHDC3Q9BQ90 RAC1P9-201ENST00000604990 392 ntBASIC0.61□□□□□ -2.31
KLHDC3Q9BQ90 AC015726.2-201ENST00000620112 122 ntBASIC0.61□□□□□ -2.31
KLHDC3Q9BQ90 MIR6835-201ENST00000621552 64 ntBASIC0.61□□□□□ -2.31
KLHDC3Q9BQ90 RNU6-1205P-201ENST00000363625 106 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 RNA5SP499-201ENST00000363982 119 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 Y_RNA.419-201ENST00000384041 102 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 SNORA51.10-201ENST00000384418 136 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 Y_RNA.569-201ENST00000384749 103 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 MIR518E-201ENST00000385252 88 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 RNU6-308P-201ENST00000390957 107 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 RNU6-823P-201ENST00000391042 103 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 MIR1252-201ENST00000408861 65 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 RNU6-101P-201ENST00000410323 104 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 RNU6-994P-201ENST00000410507 111 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 Y_RNA.602-201ENST00000410535 92 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 PMCHL1-202ENST00000423102 261 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 AC023449.1-201ENST00000454464 154 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 AL117351.2-201ENST00000513571 157 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 SCARNA8-201ENST00000515924 131 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 AP003484.1-201ENST00000530974 250 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 AC104465.1-201ENST00000611365 139 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 AL136317.1-201ENST00000612653 226 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 MIR6788-201ENST00000618842 66 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 MIR6516-201ENST00000630554 81 ntBASIC0.6□□□□□ -2.31
KLHDC3Q9BQ90 Y_RNA.31-201ENST00000362574 102 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 Y_RNA.116-201ENST00000363292 103 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 RNU6-654P-201ENST00000364373 107 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 Y_RNA.509-201ENST00000384506 99 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 RNU6-110P-201ENST00000384508 104 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 MIR605-201ENST00000385078 83 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 RNU6-763P-201ENST00000390865 106 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 SNORD89-201ENST00000390981 114 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 Y_RNA.581-201ENST00000391017 97 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 MTCO1P5-201ENST00000433573 344 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 RNU4-57P-201ENST00000515980 135 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 RNA5SP436-201ENST00000516020 115 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 RNA5SP220-201ENST00000516298 104 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 RNU6-897P-201ENST00000517135 105 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 RNU7-181P-201ENST00000517234 74 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 RNU6-94P-201ENST00000607728 107 ntBASIC0.59□□□□□ -2.31
KLHDC3Q9BQ90 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.59□□□□□ -2.32
KLHDC3Q9BQ90 Y_RNA.28-201ENST00000362554 111 ntBASIC0.58□□□□□ -2.32
KLHDC3Q9BQ90 RNU6-290P-201ENST00000365212 101 ntBASIC0.58□□□□□ -2.32
KLHDC3Q9BQ90 RNU6-396P-201ENST00000365369 105 ntBASIC0.58□□□□□ -2.32
KLHDC3Q9BQ90 RNU6-1335P-201ENST00000365426 107 ntBASIC0.58□□□□□ -2.32
KLHDC3Q9BQ90 MIR570-201ENST00000384917 97 ntBASIC0.58□□□□□ -2.32
KLHDC3Q9BQ90 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.58□□□□□ -2.32
KLHDC3Q9BQ90 RNU6-847P-201ENST00000411115 108 ntBASIC0.58□□□□□ -2.32
KLHDC3Q9BQ90 MTND5P15-201ENST00000434246 349 ntBASIC0.58□□□□□ -2.32
KLHDC3Q9BQ90 MRPS35P2-201ENST00000508242 191 ntBASIC0.58□□□□□ -2.32
KLHDC3Q9BQ90 MIR151B-201ENST00000584249 96 ntBASIC0.58□□□□□ -2.32
KLHDC3Q9BQ90 AL078603.1-201ENST00000603824 313 ntBASIC0.58□□□□□ -2.32
KLHDC3Q9BQ90 MIR4791-201ENST00000607666 84 ntBASIC0.58□□□□□ -2.32
KLHDC3Q9BQ90 AC013791.1-201ENST00000616619 62 ntBASIC0.58□□□□□ -2.32
KLHDC3Q9BQ90 AL160413.1-201ENST00000622780 310 ntBASIC0.58□□□□□ -2.32
KLHDC3Q9BQ90 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 Y_RNA.168-201ENST00000363740 102 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 RNU6-450P-201ENST00000364654 107 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 Y_RNA.380-201ENST00000365663 111 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 Y_RNA.389-201ENST00000383924 113 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 SNORA2B-201ENST00000384583 137 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 RNA5SP496-201ENST00000391240 109 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 MIR1827-201ENST00000408549 66 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 RPS26P5-201ENST00000418544 335 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 MTND4LP11-201ENST00000422184 280 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 Y_RNA.631-201ENST00000459607 101 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 RNU6-988P-201ENST00000519081 107 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 MIR5000-201ENST00000577717 103 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 AL021707.8-201ENST00000609428 183 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 7SK.10-201ENST00000621414 298 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 AC022140.2-201ENST00000623500 188 ntBASIC0.57□□□□□ -2.32
KLHDC3Q9BQ90 MIR377-201ENST00000362145 69 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 Y_RNA.460-201ENST00000384255 102 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 MT-TN-201ENST00000387400 73 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 SNORA53-201ENST00000391141 249 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 SNORD99-201ENST00000408612 74 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 RNU2-13P-201ENST00000515909 113 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 SNORA40.15-201ENST00000516884 107 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 RNU6-1223P-201ENST00000517124 104 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 AC133485.1-201ENST00000567176 124 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 AC138907.6-201ENST00000568401 126 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 AL512605.2-201ENST00000592972 256 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 AC037487.3-201ENST00000606668 112 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 uc_338.4-201ENST00000616635 176 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 MTND1P7-201ENST00000632801 297 ntBASIC0.56□□□□□ -2.32
KLHDC3Q9BQ90 RNU6-1272P-201ENST00000362776 107 ntBASIC0.55□□□□□ -2.32
KLHDC3Q9BQ90 Y_RNA.276-201ENST00000364732 109 ntBASIC0.55□□□□□ -2.32
KLHDC3Q9BQ90 RNU6-1138P-201ENST00000365359 106 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 186.3 ms