Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MIR1285-1-201ENST00000408593 84 ntBASIC1.3□□□□□ -2.2
USP28Q96RU2 RPS27P16-201ENST00000425758 201 ntBASIC1.3□□□□□ -2.2
USP28Q96RU2 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.3□□□□□ -2.2
USP28Q96RU2 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.3□□□□□ -2.2
USP28Q96RU2 SNORD45.4-201ENST00000516629 73 ntBASIC1.3□□□□□ -2.2
USP28Q96RU2 AC019176.1-201ENST00000518519 225 ntBASIC1.3□□□□□ -2.2
USP28Q96RU2 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.3□□□□□ -2.2
USP28Q96RU2 AC019288.1-201ENST00000557918 224 ntBASIC1.3□□□□□ -2.2
USP28Q96RU2 AC009779.6-201ENST00000603972 165 ntBASIC1.3□□□□□ -2.2
USP28Q96RU2 AL353770.2-201ENST00000620024 78 ntBASIC1.3□□□□□ -2.2
USP28Q96RU2 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.3□□□□□ -2.2
USP28Q96RU2 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.3□□□□□ -2.2
USP28Q96RU2 Y_RNA.199-201ENST00000364014 102 ntBASIC1.29□□□□□ -2.2
USP28Q96RU2 RNA5SP99-201ENST00000364020 114 ntBASIC1.29□□□□□ -2.2
USP28Q96RU2 Y_RNA.262-201ENST00000364641 102 ntBASIC1.29□□□□□ -2.2
USP28Q96RU2 SNORA25.8-201ENST00000364831 128 ntBASIC1.29□□□□□ -2.2
USP28Q96RU2 RNU6-47P-201ENST00000383866 107 ntBASIC1.29□□□□□ -2.2
USP28Q96RU2 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.29□□□□□ -2.2
USP28Q96RU2 AC027119.1-201ENST00000440877 241 ntBASIC1.29□□□□□ -2.2
USP28Q96RU2 AC009474.2-201ENST00000451383 136 ntBASIC1.29□□□□□ -2.2
USP28Q96RU2 AC092991.1-201ENST00000477176 376 ntBASIC1.29□□□□□ -2.2
USP28Q96RU2 RPL30P7-201ENST00000479312 323 ntBASIC1.29□□□□□ -2.2
USP28Q96RU2 CYCTP-201ENST00000504253 315 ntBASIC1.29□□□□□ -2.2
USP28Q96RU2 RNU6-561P-201ENST00000516222 102 ntBASIC1.29□□□□□ -2.2
USP28Q96RU2 AL365434.2-201ENST00000607979 234 ntBASIC1.29□□□□□ -2.2
USP28Q96RU2 AC090425.1-201ENST00000610007 140 ntBASIC1.29□□□□□ -2.2
USP28Q96RU2 AL353997.5-201ENST00000618886 171 ntBASIC1.29□□□□□ -2.2
USP28Q96RU2 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
USP28Q96RU2 MIR411-201ENST00000362239 96 ntBASIC1.28□□□□□ -2.2
USP28Q96RU2 RNU6-1123P-201ENST00000362347 106 ntBASIC1.28□□□□□ -2.2
USP28Q96RU2 RNU6-1084P-201ENST00000362498 107 ntBASIC1.28□□□□□ -2.2
USP28Q96RU2 Y_RNA.200-201ENST00000364018 102 ntBASIC1.28□□□□□ -2.2
USP28Q96RU2 RNU4-17P-201ENST00000365598 141 ntBASIC1.28□□□□□ -2.2
USP28Q96RU2 RNU6-1065P-201ENST00000384513 106 ntBASIC1.28□□□□□ -2.2
USP28Q96RU2 Y_RNA.587-201ENST00000391210 103 ntBASIC1.28□□□□□ -2.2
USP28Q96RU2 AP1B1P2-201ENST00000416196 106 ntBASIC1.28□□□□□ -2.2
USP28Q96RU2 BTF3P4-201ENST00000418852 495 ntBASIC1.28□□□□□ -2.2
USP28Q96RU2 RNU6-917P-201ENST00000516294 104 ntBASIC1.28□□□□□ -2.2
USP28Q96RU2 RNU6-1007P-201ENST00000516586 107 ntBASIC1.28□□□□□ -2.2
USP28Q96RU2 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.28□□□□□ -2.2
USP28Q96RU2 MIR4524B-201ENST00000581569 115 ntBASIC1.28□□□□□ -2.2
USP28Q96RU2 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.28□□□□□ -2.2
USP28Q96RU2 AC008507.4-201ENST00000585464 127 ntBASIC1.28□□□□□ -2.2
USP28Q96RU2 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
USP28Q96RU2 RNU6-939P-201ENST00000384634 107 ntBASIC1.27□□□□□ -2.21
USP28Q96RU2 MIR516B2-201ENST00000385190 85 ntBASIC1.27□□□□□ -2.21
USP28Q96RU2 Y_RNA.622-201ENST00000411091 108 ntBASIC1.27□□□□□ -2.21
USP28Q96RU2 SNRPGP14-201ENST00000435400 219 ntBASIC1.27□□□□□ -2.21
USP28Q96RU2 RNU6-138P-201ENST00000515952 107 ntBASIC1.27□□□□□ -2.21
USP28Q96RU2 RNU7-149P-201ENST00000516739 59 ntBASIC1.27□□□□□ -2.21
USP28Q96RU2 AC022559.1-201ENST00000520905 205 ntBASIC1.27□□□□□ -2.21
USP28Q96RU2 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
USP28Q96RU2 MIR2681-201ENST00000581814 105 ntBASIC1.27□□□□□ -2.21
USP28Q96RU2 RNU2-4P-201ENST00000606190 192 ntBASIC1.27□□□□□ -2.21
USP28Q96RU2 uc_338.4-201ENST00000616635 176 ntBASIC1.27□□□□□ -2.21
USP28Q96RU2 AC141273.2-201ENST00000618989 130 ntBASIC1.27□□□□□ -2.21
USP28Q96RU2 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
USP28Q96RU2 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
USP28Q96RU2 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
USP28Q96RU2 Y_RNA.83-201ENST00000363005 113 ntBASIC1.26□□□□□ -2.21
USP28Q96RU2 RNU6-833P-201ENST00000363486 107 ntBASIC1.26□□□□□ -2.21
USP28Q96RU2 snoU2-30.1-201ENST00000365012 70 ntBASIC1.26□□□□□ -2.21
USP28Q96RU2 MIR891A-201ENST00000401237 79 ntBASIC1.26□□□□□ -2.21
USP28Q96RU2 AL606845.1-201ENST00000404881 255 ntBASIC1.26□□□□□ -2.21
USP28Q96RU2 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.26□□□□□ -2.21
USP28Q96RU2 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.26□□□□□ -2.21
USP28Q96RU2 AC027279.3-201ENST00000625055 122 ntBASIC1.26□□□□□ -2.21
USP28Q96RU2 Y_RNA.257-201ENST00000364596 102 ntBASIC1.25□□□□□ -2.21
USP28Q96RU2 Y_RNA.486-201ENST00000384398 107 ntBASIC1.25□□□□□ -2.21
USP28Q96RU2 RNU6-918P-201ENST00000391219 106 ntBASIC1.25□□□□□ -2.21
USP28Q96RU2 RNA5SP496-201ENST00000391240 109 ntBASIC1.25□□□□□ -2.21
USP28Q96RU2 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.25□□□□□ -2.21
USP28Q96RU2 COX6CP14-201ENST00000469580 174 ntBASIC1.25□□□□□ -2.21
USP28Q96RU2 SNORD77.4-201ENST00000516158 81 ntBASIC1.25□□□□□ -2.21
USP28Q96RU2 AC090142.3-201ENST00000519012 385 ntBASIC1.25□□□□□ -2.21
USP28Q96RU2 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.25□□□□□ -2.21
USP28Q96RU2 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
USP28Q96RU2 RNU6-199P-201ENST00000362954 107 ntBASIC1.24□□□□□ -2.21
USP28Q96RU2 Y_RNA.297-201ENST00000364950 91 ntBASIC1.24□□□□□ -2.21
USP28Q96RU2 RNU6-1318P-201ENST00000365389 103 ntBASIC1.24□□□□□ -2.21
USP28Q96RU2 Y_RNA.552-201ENST00000384665 112 ntBASIC1.24□□□□□ -2.21
USP28Q96RU2 MIR616-201ENST00000385293 97 ntBASIC1.24□□□□□ -2.21
USP28Q96RU2 RNU6-1228P-201ENST00000391014 107 ntBASIC1.24□□□□□ -2.21
USP28Q96RU2 RNU6-922P-201ENST00000516753 99 ntBASIC1.24□□□□□ -2.21
USP28Q96RU2 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.24□□□□□ -2.21
USP28Q96RU2 AL157834.3-201ENST00000615543 103 ntBASIC1.24□□□□□ -2.21
USP28Q96RU2 Pinc.1-201ENST00000616452 154 ntBASIC1.24□□□□□ -2.21
USP28Q96RU2 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.24□□□□□ -2.21
USP28Q96RU2 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.24□□□□□ -2.21
USP28Q96RU2 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
USP28Q96RU2 Y_RNA.91-201ENST00000363042 107 ntBASIC1.23□□□□□ -2.21
USP28Q96RU2 SNORD14E-201ENST00000364009 85 ntBASIC1.23□□□□□ -2.21
USP28Q96RU2 RNU6-268P-201ENST00000364174 107 ntBASIC1.23□□□□□ -2.21
USP28Q96RU2 Y_RNA.238-201ENST00000364441 102 ntBASIC1.23□□□□□ -2.21
USP28Q96RU2 RNU6-484P-201ENST00000384016 107 ntBASIC1.23□□□□□ -2.21
USP28Q96RU2 SNORD41-201ENST00000386967 70 ntBASIC1.23□□□□□ -2.21
USP28Q96RU2 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.23□□□□□ -2.21
USP28Q96RU2 SNRPGP8-201ENST00000454064 226 ntBASIC1.23□□□□□ -2.21
USP28Q96RU2 RN7SKP164-201ENST00000516138 266 ntBASIC1.23□□□□□ -2.21
USP28Q96RU2 Y_RNA.666-201ENST00000516187 112 ntBASIC1.23□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms