Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SNORD24-201ENST00000383884 75 ntBASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 RNU6-32P-201ENST00000383948 107 ntBASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 RNU6-13P-201ENST00000384248 107 ntBASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 RNU6-12P-201ENST00000384604 107 ntBASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 RNU6-41P-201ENST00000384741 107 ntBASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 MTATP6P21-201ENST00000440681 189 ntBASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 HMGN1P7-201ENST00000491722 313 ntBASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 AL163195.1-201ENST00000496941 348 ntBASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 MIR3945-201ENST00000581853 98 ntBASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 MIR4448-201ENST00000584360 86 ntBASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 AC008507.4-201ENST00000585464 127 ntBASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 AL773524.1-201ENST00000614065 229 ntBASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 RNU6-112P-201ENST00000363599 104 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 SNORD114-30-201ENST00000364448 72 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 MIR520A-201ENST00000384862 85 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 SNORA12.1-201ENST00000390873 148 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 SNORD77.3-201ENST00000391113 65 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 MIR1263-201ENST00000408324 86 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 RNU6-554P-201ENST00000410466 106 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 RNU4-53P-201ENST00000410828 140 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 RNA5SP100-201ENST00000410903 110 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 RNA5SP59-201ENST00000410922 110 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 AL031737.1-201ENST00000450125 223 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 RNA5SP57-201ENST00000459463 123 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 RPS29P21-201ENST00000496272 170 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 AC234781.5-201ENST00000508429 271 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 Y_RNA.666-201ENST00000516187 112 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 RNU6-1270P-201ENST00000517128 108 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 AC006254.2-201ENST00000603259 279 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
CLIP3Q96DZ5 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
CLIP3Q96DZ5 RNA5SP456-201ENST00000364002 114 ntBASIC2.31□□□□□ -2.04
CLIP3Q96DZ5 Y_RNA.528-201ENST00000384575 108 ntBASIC2.31□□□□□ -2.04
CLIP3Q96DZ5 SNRPGP10-201ENST00000432323 225 ntBASIC2.31□□□□□ -2.04
CLIP3Q96DZ5 RPS27P21-201ENST00000486977 252 ntBASIC2.31□□□□□ -2.04
CLIP3Q96DZ5 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.31□□□□□ -2.04
CLIP3Q96DZ5 RNU6-1291P-201ENST00000516591 104 ntBASIC2.31□□□□□ -2.04
CLIP3Q96DZ5 RNU6-1149P-201ENST00000516810 97 ntBASIC2.31□□□□□ -2.04
CLIP3Q96DZ5 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.31□□□□□ -2.04
CLIP3Q96DZ5 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.31□□□□□ -2.04
CLIP3Q96DZ5 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.3□□□□□ -2.04
CLIP3Q96DZ5 U8.2-201ENST00000363156 134 ntBASIC2.3□□□□□ -2.04
CLIP3Q96DZ5 SNORA63D-201ENST00000364359 132 ntBASIC2.3□□□□□ -2.04
CLIP3Q96DZ5 Y_RNA.369-201ENST00000365568 117 ntBASIC2.3□□□□□ -2.04
CLIP3Q96DZ5 SNORA70B-201ENST00000384210 135 ntBASIC2.3□□□□□ -2.04
CLIP3Q96DZ5 MIR518F-201ENST00000384973 87 ntBASIC2.3□□□□□ -2.04
CLIP3Q96DZ5 AC244636.1-201ENST00000421152 228 ntBASIC2.3□□□□□ -2.04
CLIP3Q96DZ5 RNU7-94P-201ENST00000459576 63 ntBASIC2.3□□□□□ -2.04
CLIP3Q96DZ5 RPS29P24-201ENST00000486345 171 ntBASIC2.3□□□□□ -2.04
CLIP3Q96DZ5 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 Y_RNA.85-201ENST00000363014 111 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 RNU6-1107P-201ENST00000364817 104 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 Y_RNA.366-201ENST00000365540 102 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 RNU4-52P-201ENST00000384209 138 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 RNU6-296P-201ENST00000384608 107 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 Y_RNA.549-201ENST00000384657 102 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 RNU2-7P-201ENST00000410794 178 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 Y_RNA.621-201ENST00000411065 96 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 RPL23AP6-201ENST00000446637 472 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 Y_RNA.677-201ENST00000516401 85 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 RNU6-113P-201ENST00000516653 101 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 RNU6-341P-201ENST00000516973 96 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 AC007012.1-201ENST00000567192 175 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 MIR6079-201ENST00000635807 62 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 AP000553.5-201ENST00000641933 54 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 ZNF720P1-201ENST00000562403 1939 ntBASIC2.29□□□□□ -2.04
CLIP3Q96DZ5 AC018630.2-201ENST00000534866 2403 ntBASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 Y_RNA.348-201ENST00000365403 103 ntBASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 RNU6-905P-201ENST00000384434 107 ntBASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 MIR570-201ENST00000384917 97 ntBASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 RNA5SP136-201ENST00000410906 107 ntBASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 AC233266.1-201ENST00000454518 96 ntBASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 AC026436.1-201ENST00000510537 270 ntBASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 RNU6-693P-201ENST00000516134 107 ntBASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 AL358944.1-201ENST00000528537 144 ntBASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 MIR4299-201ENST00000577899 72 ntBASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 AC242852.1-201ENST00000612151 96 ntBASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 AL591926.4-201ENST00000616895 298 ntBASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 AC244015.1-201ENST00000622301 99 ntBASIC2.28□□□□□ -2.04
CLIP3Q96DZ5 ZNF658B-202ENST00000615961 3375 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 RNU6-640P-201ENST00000363693 105 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 MIR522-201ENST00000385071 87 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 SNORD12C-201ENST00000386307 89 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 RNA5SP425-201ENST00000410336 112 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 AL356379.1-201ENST00000414105 126 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 Z98742.3-201ENST00000418637 326 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 SNRPGP13-201ENST00000442212 177 ntBASIC2.27□□□□□ -2.05
CLIP3Q96DZ5 RNA5SP233-201ENST00000459153 113 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 169.3 ms