Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNU6-847P-201ENST00000411115 108 ntBASIC0.42□□□□□ -2.34
HDDC3Q8N4P3 RNU6-177P-201ENST00000411257 104 ntBASIC0.42□□□□□ -2.34
HDDC3Q8N4P3 SNORD116.3-201ENST00000517176 78 ntBASIC0.42□□□□□ -2.34
HDDC3Q8N4P3 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.42□□□□□ -2.34
HDDC3Q8N4P3 MIR3145-201ENST00000580727 82 ntBASIC0.42□□□□□ -2.34
HDDC3Q8N4P3 AC010205.1-201ENST00000616668 449 ntBASIC0.42□□□□□ -2.34
HDDC3Q8N4P3 MTND4LP32-201ENST00000636111 270 ntBASIC0.42□□□□□ -2.34
HDDC3Q8N4P3 RNU6-1040P-201ENST00000383974 107 ntBASIC0.41□□□□□ -2.34
HDDC3Q8N4P3 RNA5SP63-201ENST00000391225 112 ntBASIC0.41□□□□□ -2.34
HDDC3Q8N4P3 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.41□□□□□ -2.34
HDDC3Q8N4P3 RPS29P30-201ENST00000600975 111 ntBASIC0.41□□□□□ -2.34
HDDC3Q8N4P3 AC092794.1-201ENST00000612734 582 ntBASIC0.41□□□□□ -2.34
HDDC3Q8N4P3 MIR4272-201ENST00000635924 64 ntBASIC0.41□□□□□ -2.34
HDDC3Q8N4P3 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
HDDC3Q8N4P3 RNU6-934P-201ENST00000365154 107 ntBASIC0.4□□□□□ -2.35
HDDC3Q8N4P3 Y_RNA.384-201ENST00000383909 102 ntBASIC0.4□□□□□ -2.35
HDDC3Q8N4P3 Y_RNA.387-201ENST00000383918 102 ntBASIC0.4□□□□□ -2.35
HDDC3Q8N4P3 RNY4P36-201ENST00000391116 96 ntBASIC0.4□□□□□ -2.35
HDDC3Q8N4P3 SNORA36B-201ENST00000410438 131 ntBASIC0.4□□□□□ -2.35
HDDC3Q8N4P3 AC098614.3-201ENST00000438957 440 ntBASIC0.4□□□□□ -2.35
HDDC3Q8N4P3 AC023932.2-201ENST00000603176 175 ntBASIC0.4□□□□□ -2.35
HDDC3Q8N4P3 MIR2909-201ENST00000617113 69 ntBASIC0.4□□□□□ -2.35
HDDC3Q8N4P3 AC243994.1-201ENST00000618627 109 ntBASIC0.4□□□□□ -2.35
HDDC3Q8N4P3 AC139792.2-201ENST00000624218 587 ntBASIC0.4□□□□□ -2.35
HDDC3Q8N4P3 SNORD81.1-201ENST00000363064 77 ntBASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 SNORD18A-201ENST00000363753 72 ntBASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 RNU4-45P-201ENST00000365469 141 ntBASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 SNORD72-201ENST00000390994 80 ntBASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 MIR1278-201ENST00000408753 81 ntBASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 SNORD83.1-201ENST00000411362 77 ntBASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 MTCO2P12-201ENST00000427426 682 ntBASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 RNU4-57P-201ENST00000515980 135 ntBASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 MIR4771-2-201ENST00000577758 74 ntBASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 MIR4771-1-201ENST00000582617 74 ntBASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 MIR4264-201ENST00000583520 66 ntBASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 AC006441.5-201ENST00000612680 209 ntBASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 uc_338.4-201ENST00000616635 176 ntBASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 AL138825.1-201ENST00000618587 192 ntBASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.39□□□□□ -2.35
HDDC3Q8N4P3 Y_RNA.39-201ENST00000362620 98 ntBASIC0.38□□□□□ -2.35
HDDC3Q8N4P3 Y_RNA.412-201ENST00000384001 104 ntBASIC0.38□□□□□ -2.35
HDDC3Q8N4P3 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.38□□□□□ -2.35
HDDC3Q8N4P3 snoU13.21-201ENST00000459368 105 ntBASIC0.38□□□□□ -2.35
HDDC3Q8N4P3 AC107297.1-201ENST00000459991 176 ntBASIC0.38□□□□□ -2.35
HDDC3Q8N4P3 SNORA68.3-201ENST00000515906 83 ntBASIC0.38□□□□□ -2.35
HDDC3Q8N4P3 AL162730.1-201ENST00000605734 292 ntBASIC0.38□□□□□ -2.35
HDDC3Q8N4P3 AL121655.1-201ENST00000605811 308 ntBASIC0.38□□□□□ -2.35
HDDC3Q8N4P3 RNU6-369P-201ENST00000362515 102 ntBASIC0.37□□□□□ -2.35
HDDC3Q8N4P3 Y_RNA.551-201ENST00000384661 102 ntBASIC0.37□□□□□ -2.35
HDDC3Q8N4P3 RNU4-30P-201ENST00000410245 143 ntBASIC0.37□□□□□ -2.35
HDDC3Q8N4P3 RNU7-141P-201ENST00000459304 62 ntBASIC0.37□□□□□ -2.35
HDDC3Q8N4P3 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.37□□□□□ -2.35
HDDC3Q8N4P3 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.36□□□□□ -2.35
HDDC3Q8N4P3 RNU6-674P-201ENST00000363831 107 ntBASIC0.36□□□□□ -2.35
HDDC3Q8N4P3 SNORD45.3-201ENST00000363836 72 ntBASIC0.36□□□□□ -2.35
HDDC3Q8N4P3 RNU6-580P-201ENST00000365159 107 ntBASIC0.36□□□□□ -2.35
HDDC3Q8N4P3 Y_RNA.439-201ENST00000384119 94 ntBASIC0.36□□□□□ -2.35
HDDC3Q8N4P3 RNU6-35P-201ENST00000384530 107 ntBASIC0.36□□□□□ -2.35
HDDC3Q8N4P3 RNU6-1248P-201ENST00000391096 64 ntBASIC0.36□□□□□ -2.35
HDDC3Q8N4P3 POLR2KP2-201ENST00000438155 177 ntBASIC0.36□□□□□ -2.35
HDDC3Q8N4P3 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.36□□□□□ -2.35
HDDC3Q8N4P3 AC023449.1-201ENST00000454464 154 ntBASIC0.36□□□□□ -2.35
HDDC3Q8N4P3 RNA5SP285-201ENST00000516619 119 ntBASIC0.36□□□□□ -2.35
HDDC3Q8N4P3 Y_RNA.713-201ENST00000517013 96 ntBASIC0.36□□□□□ -2.35
HDDC3Q8N4P3 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.36□□□□□ -2.35
HDDC3Q8N4P3 MIR18A-201ENST00000362310 71 ntBASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 RNU6-1048P-201ENST00000364054 107 ntBASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 RNU4-67P-201ENST00000364569 141 ntBASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 RNY3-201ENST00000365484 102 ntBASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 Y_RNA.463-201ENST00000384271 102 ntBASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 RNU6-125P-201ENST00000384505 107 ntBASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 AL603910.2-201ENST00000407268 136 ntBASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 AC015818.7-201ENST00000428754 109 ntBASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 AC087499.7-201ENST00000441958 109 ntBASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 Y_RNA.661-201ENST00000516003 99 ntBASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 MIR3612-201ENST00000579753 87 ntBASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 AC005357.1-201ENST00000588399 301 ntBASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.35□□□□□ -2.35
HDDC3Q8N4P3 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.34□□□□□ -2.35
HDDC3Q8N4P3 MIRLET7D-201ENST00000362263 87 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 Y_RNA.383-201ENST00000383855 97 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 SNORA72.4-201ENST00000384174 132 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 RNU6-937P-201ENST00000384325 106 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 SNORD116-29-201ENST00000384516 83 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 AL160004.2-201ENST00000432935 350 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 SNORD11-201ENST00000459124 84 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 snoU13.16-201ENST00000459350 104 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 RNA5SP134-201ENST00000516492 96 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 Y_RNA.718-201ENST00000517110 102 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 AC092447.9-201ENST00000603395 144 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 AC084781.2-201ENST00000615568 161 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 AC092634.7-201ENST00000621022 103 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 MIR1302-1-201ENST00000637932 143 ntBASIC0.34□□□□□ -2.36
HDDC3Q8N4P3 RNU4-80P-201ENST00000363200 141 ntBASIC0.33□□□□□ -2.36
HDDC3Q8N4P3 SNORD63-201ENST00000384262 68 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 178.5 ms