Protein–RNA interactions for Protein: Q86TM3

DDX53, Probable ATP-dependent RNA helicase DDX53, humanhuman

Known RBP Predictions only

Length 631 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX53Q86TM3 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
DDX53Q86TM3 MIR891A-201ENST00000401237 79 ntBASIC2.22□□□□□ -2.05
DDX53Q86TM3 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.22□□□□□ -2.05
DDX53Q86TM3 RNU6-588P-201ENST00000410281 105 ntBASIC2.22□□□□□ -2.05
DDX53Q86TM3 AC244636.1-201ENST00000421152 228 ntBASIC2.22□□□□□ -2.05
DDX53Q86TM3 PGBD4P5-201ENST00000445958 426 ntBASIC2.22□□□□□ -2.05
DDX53Q86TM3 AC093850.1-201ENST00000454121 251 ntBASIC2.22□□□□□ -2.05
DDX53Q86TM3 RNU6-693P-201ENST00000516134 107 ntBASIC2.22□□□□□ -2.05
DDX53Q86TM3 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.22□□□□□ -2.05
DDX53Q86TM3 MIR3646-201ENST00000578301 84 ntBASIC2.22□□□□□ -2.05
DDX53Q86TM3 AC006441.5-201ENST00000612680 209 ntBASIC2.22□□□□□ -2.05
DDX53Q86TM3 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
DDX53Q86TM3 SNORA25.7-201ENST00000364375 127 ntBASIC2.21□□□□□ -2.06
DDX53Q86TM3 RNU6-1082P-201ENST00000364574 107 ntBASIC2.21□□□□□ -2.06
DDX53Q86TM3 SNORD24-201ENST00000383884 75 ntBASIC2.21□□□□□ -2.06
DDX53Q86TM3 RNU4-61P-201ENST00000411243 107 ntBASIC2.21□□□□□ -2.06
DDX53Q86TM3 SNORA25.12-201ENST00000516202 82 ntBASIC2.21□□□□□ -2.06
DDX53Q86TM3 AC121758.2-201ENST00000553271 193 ntBASIC2.21□□□□□ -2.06
DDX53Q86TM3 AC112693.2-201ENST00000556538 232 ntBASIC2.21□□□□□ -2.06
DDX53Q86TM3 MIR4778-201ENST00000577635 80 ntBASIC2.21□□□□□ -2.06
DDX53Q86TM3 AL513423.1-201ENST00000621695 132 ntBASIC2.21□□□□□ -2.06
DDX53Q86TM3 SNORD3E-202ENST00000627253 216 ntBASIC2.21□□□□□ -2.06
DDX53Q86TM3 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
DDX53Q86TM3 AL596028.1-201ENST00000326971 197 ntBASIC2.2□□□□□ -2.06
DDX53Q86TM3 RNU6-888P-201ENST00000363010 101 ntBASIC2.2□□□□□ -2.06
DDX53Q86TM3 Y_RNA.140-201ENST00000363474 103 ntBASIC2.2□□□□□ -2.06
DDX53Q86TM3 RNU6-833P-201ENST00000363486 107 ntBASIC2.2□□□□□ -2.06
DDX53Q86TM3 RNU6-203P-201ENST00000384038 104 ntBASIC2.2□□□□□ -2.06
DDX53Q86TM3 RNU6-439P-201ENST00000384188 106 ntBASIC2.2□□□□□ -2.06
DDX53Q86TM3 MIR660-201ENST00000385235 97 ntBASIC2.2□□□□□ -2.06
DDX53Q86TM3 SNORA75.5-201ENST00000391291 81 ntBASIC2.2□□□□□ -2.06
DDX53Q86TM3 AC019129.1-201ENST00000403786 261 ntBASIC2.2□□□□□ -2.06
DDX53Q86TM3 MIR548O-201ENST00000408583 114 ntBASIC2.2□□□□□ -2.06
DDX53Q86TM3 RNU7-25P-201ENST00000516544 62 ntBASIC2.2□□□□□ -2.06
DDX53Q86TM3 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.2□□□□□ -2.06
DDX53Q86TM3 MIR548X2-201ENST00000579776 100 ntBASIC2.2□□□□□ -2.06
DDX53Q86TM3 ZNF720P1-201ENST00000562403 1939 ntBASIC2.19□□□□□ -2.06
DDX53Q86TM3 MIR424-201ENST00000362227 98 ntBASIC2.19□□□□□ -2.06
DDX53Q86TM3 SNORA1-201ENST00000384107 130 ntBASIC2.19□□□□□ -2.06
DDX53Q86TM3 MIR548A2-201ENST00000384956 97 ntBASIC2.19□□□□□ -2.06
DDX53Q86TM3 MIR17-201ENST00000385012 84 ntBASIC2.19□□□□□ -2.06
DDX53Q86TM3 MIR569-201ENST00000385228 96 ntBASIC2.19□□□□□ -2.06
DDX53Q86TM3 MIR513C-201ENST00000401352 84 ntBASIC2.19□□□□□ -2.06
DDX53Q86TM3 MIR1287-201ENST00000408492 90 ntBASIC2.19□□□□□ -2.06
DDX53Q86TM3 RPL23AP6-201ENST00000446637 472 ntBASIC2.19□□□□□ -2.06
DDX53Q86TM3 MIR4299-201ENST00000577899 72 ntBASIC2.19□□□□□ -2.06
DDX53Q86TM3 MIR3129-201ENST00000581095 76 ntBASIC2.19□□□□□ -2.06
DDX53Q86TM3 AC015726.2-201ENST00000620112 122 ntBASIC2.19□□□□□ -2.06
DDX53Q86TM3 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
DDX53Q86TM3 Y_RNA.343-201ENST00000365354 112 ntBASIC2.18□□□□□ -2.06
DDX53Q86TM3 MIR518F-201ENST00000384973 87 ntBASIC2.18□□□□□ -2.06
DDX53Q86TM3 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
DDX53Q86TM3 RNA5SP182-201ENST00000516064 82 ntBASIC2.18□□□□□ -2.06
DDX53Q86TM3 RNA5SP272-201ENST00000516095 111 ntBASIC2.18□□□□□ -2.06
DDX53Q86TM3 RNU6-426P-201ENST00000516464 97 ntBASIC2.18□□□□□ -2.06
DDX53Q86TM3 AC022254.1-201ENST00000567857 235 ntBASIC2.18□□□□□ -2.06
DDX53Q86TM3 AP000942.3-201ENST00000603702 160 ntBASIC2.18□□□□□ -2.06
DDX53Q86TM3 MIR6840-201ENST00000611937 71 ntBASIC2.18□□□□□ -2.06
DDX53Q86TM3 MIR6845-201ENST00000613182 61 ntBASIC2.18□□□□□ -2.06
DDX53Q86TM3 Y_RNA.783-201ENST00000613546 102 ntBASIC2.18□□□□□ -2.06
DDX53Q86TM3 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
DDX53Q86TM3 RNU6-414P-201ENST00000363705 104 ntBASIC2.17□□□□□ -2.06
DDX53Q86TM3 RNY1P11-201ENST00000363759 113 ntBASIC2.17□□□□□ -2.06
DDX53Q86TM3 SNORD38C-201ENST00000384381 69 ntBASIC2.17□□□□□ -2.06
DDX53Q86TM3 MIR583-201ENST00000384846 75 ntBASIC2.17□□□□□ -2.06
DDX53Q86TM3 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.17□□□□□ -2.06
DDX53Q86TM3 AC015922.2-201ENST00000435593 184 ntBASIC2.17□□□□□ -2.06
DDX53Q86TM3 AL392103.1-201ENST00000447000 198 ntBASIC2.17□□□□□ -2.06
DDX53Q86TM3 AC108729.3-201ENST00000513484 108 ntBASIC2.17□□□□□ -2.06
DDX53Q86TM3 AL365205.2-201ENST00000594586 68 ntBASIC2.17□□□□□ -2.06
DDX53Q86TM3 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.17□□□□□ -2.06
DDX53Q86TM3 AC095038.3-201ENST00000634439 195 ntBASIC2.17□□□□□ -2.06
DDX53Q86TM3 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.17□□□□□ -2.06
DDX53Q86TM3 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
DDX53Q86TM3 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
DDX53Q86TM3 MIRLET7G-201ENST00000362280 84 ntBASIC2.16□□□□□ -2.06
DDX53Q86TM3 Y_RNA.547-201ENST00000384654 119 ntBASIC2.16□□□□□ -2.06
DDX53Q86TM3 MIR613-201ENST00000385248 95 ntBASIC2.16□□□□□ -2.06
DDX53Q86TM3 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.16□□□□□ -2.06
DDX53Q86TM3 RNU6-1053P-201ENST00000515930 101 ntBASIC2.16□□□□□ -2.06
DDX53Q86TM3 AC090142.3-201ENST00000519012 385 ntBASIC2.16□□□□□ -2.06
DDX53Q86TM3 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.06
DDX53Q86TM3 Y_RNA.542-201ENST00000384641 111 ntBASIC2.15□□□□□ -2.07
DDX53Q86TM3 MIR516B2-201ENST00000385190 85 ntBASIC2.15□□□□□ -2.07
DDX53Q86TM3 AL356379.1-201ENST00000414105 126 ntBASIC2.15□□□□□ -2.07
DDX53Q86TM3 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.15□□□□□ -2.07
DDX53Q86TM3 AF228730.3-201ENST00000436691 102 ntBASIC2.15□□□□□ -2.07
DDX53Q86TM3 RNU7-197P-201ENST00000458836 62 ntBASIC2.15□□□□□ -2.07
DDX53Q86TM3 AC092991.1-201ENST00000477176 376 ntBASIC2.15□□□□□ -2.07
DDX53Q86TM3 RPS27P21-201ENST00000486977 252 ntBASIC2.15□□□□□ -2.07
DDX53Q86TM3 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.15□□□□□ -2.07
DDX53Q86TM3 SNORA18.4-201ENST00000516440 124 ntBASIC2.15□□□□□ -2.07
DDX53Q86TM3 MIR4713-201ENST00000582691 75 ntBASIC2.15□□□□□ -2.07
DDX53Q86TM3 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
DDX53Q86TM3 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
DDX53Q86TM3 RNU6-1123P-201ENST00000362347 106 ntBASIC2.14□□□□□ -2.07
DDX53Q86TM3 Y_RNA.497-201ENST00000384447 98 ntBASIC2.14□□□□□ -2.07
DDX53Q86TM3 SNORA20-201ENST00000384662 132 ntBASIC2.14□□□□□ -2.07
DDX53Q86TM3 Y_RNA.568-201ENST00000384742 113 ntBASIC2.14□□□□□ -2.07
DDX53Q86TM3 MIR194-1-201ENST00000384892 85 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 170.1 ms