Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 HULC.1-201ENST00000612720 240 ntBASIC-1.86□□□□□ -2.71
CCDC58Q4VC31 AL354950.2-201ENST00000617939 290 ntBASIC-1.86□□□□□ -2.71
CCDC58Q4VC31 AC006927.3-201ENST00000638789 384 ntBASIC-1.86□□□□□ -2.71
CCDC58Q4VC31 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 Y_RNA.6-201ENST00000362350 114 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-34-201ENST00000362441 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-12-201ENST00000362583 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-29-201ENST00000362834 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-9-201ENST00000362912 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-21-201ENST00000362963 81 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-14-201ENST00000363090 81 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-13-201ENST00000363358 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-11-201ENST00000363616 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-5-201ENST00000363633 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-39-201ENST00000363694 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-4-201ENST00000363810 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-16-201ENST00000363887 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-6-201ENST00000363942 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-15-201ENST00000364809 81 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-1-201ENST00000364961 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-26-201ENST00000365067 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-10-201ENST00000365073 81 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-43-201ENST00000365503 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-36-201ENST00000365629 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 MIRLET7F2-201ENST00000385277 83 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 MTCO2P16-201ENST00000436962 677 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 RNU7-104P-201ENST00000459398 79 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 RNU7-55P-201ENST00000459426 62 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 CCDC34P1-201ENST00000507441 517 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 snoU83B.1-201ENST00000517136 88 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 AL360085.1-201ENST00000604713 532 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 AL158050.2-201ENST00000605336 568 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 SNORD115-40-201ENST00000606510 82 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 MIR3674-201ENST00000636576 68 ntBASIC-1.87□□□□□ -2.71
CCDC58Q4VC31 RNU6-1036P-201ENST00000383959 104 ntBASIC-1.88□□□□□ -2.71
CCDC58Q4VC31 Y_RNA.458-201ENST00000384240 102 ntBASIC-1.88□□□□□ -2.71
CCDC58Q4VC31 U8.15-201ENST00000390947 134 ntBASIC-1.88□□□□□ -2.71
CCDC58Q4VC31 RNU6-1001P-201ENST00000411265 100 ntBASIC-1.88□□□□□ -2.71
CCDC58Q4VC31 AP000676.1-201ENST00000533307 52 ntBASIC-1.88□□□□□ -2.71
CCDC58Q4VC31 AL356055.1-201ENST00000602528 446 ntBASIC-1.88□□□□□ -2.71
CCDC58Q4VC31 RNY4P34-201ENST00000364779 95 ntBASIC-1.89□□□□□ -2.71
CCDC58Q4VC31 RNU6-1200P-201ENST00000384162 107 ntBASIC-1.89□□□□□ -2.71
CCDC58Q4VC31 Y_RNA.494-201ENST00000384432 111 ntBASIC-1.89□□□□□ -2.71
CCDC58Q4VC31 HLA-S-202ENST00000425174 53 ntBASIC-1.89□□□□□ -2.71
CCDC58Q4VC31 FCF1P4-201ENST00000448326 183 ntBASIC-1.89□□□□□ -2.71
CCDC58Q4VC31 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-1.89□□□□□ -2.71
CCDC58Q4VC31 RNU6-189P-201ENST00000516120 101 ntBASIC-1.89□□□□□ -2.71
CCDC58Q4VC31 RNU4ATAC8P-201ENST00000516196 109 ntBASIC-1.89□□□□□ -2.71
CCDC58Q4VC31 RNU6-966P-201ENST00000516479 104 ntBASIC-1.89□□□□□ -2.71
CCDC58Q4VC31 MIR3682-201ENST00000581338 84 ntBASIC-1.89□□□□□ -2.71
CCDC58Q4VC31 MIR4473-201ENST00000583731 91 ntBASIC-1.89□□□□□ -2.71
CCDC58Q4VC31 AP000942.4-201ENST00000604811 241 ntBASIC-1.89□□□□□ -2.71
CCDC58Q4VC31 AC011373.1-201ENST00000607270 237 ntBASIC-1.89□□□□□ -2.71
CCDC58Q4VC31 AL357078.3-201ENST00000607528 618 ntBASIC-1.89□□□□□ -2.71
CCDC58Q4VC31 Y_RNA.110-201ENST00000363220 99 ntBASIC-1.9□□□□□ -2.71
CCDC58Q4VC31 SNORD114-29-201ENST00000364819 70 ntBASIC-1.9□□□□□ -2.71
CCDC58Q4VC31 RNU6-517P-201ENST00000384362 110 ntBASIC-1.9□□□□□ -2.71
CCDC58Q4VC31 Y_RNA.498-201ENST00000384460 102 ntBASIC-1.9□□□□□ -2.71
CCDC58Q4VC31 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-1.9□□□□□ -2.71
CCDC58Q4VC31 Y_RNA.598-201ENST00000410480 95 ntBASIC-1.9□□□□□ -2.71
CCDC58Q4VC31 AC096949.1-201ENST00000412047 152 ntBASIC-1.9□□□□□ -2.71
CCDC58Q4VC31 RNU7-53P-201ENST00000516705 60 ntBASIC-1.9□□□□□ -2.71
CCDC58Q4VC31 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.9□□□□□ -2.71
CCDC58Q4VC31 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-1.9□□□□□ -2.71
CCDC58Q4VC31 AC008507.4-201ENST00000585464 127 ntBASIC-1.9□□□□□ -2.71
CCDC58Q4VC31 AC073648.5-201ENST00000603502 305 ntBASIC-1.9□□□□□ -2.71
CCDC58Q4VC31 JPX_2.1-201ENST00000614161 69 ntBASIC-1.9□□□□□ -2.71
CCDC58Q4VC31 RNU6-509P-201ENST00000363519 107 ntBASIC-1.91□□□□□ -2.72
CCDC58Q4VC31 Y_RNA.241-201ENST00000364470 117 ntBASIC-1.91□□□□□ -2.72
CCDC58Q4VC31 RNU4-75P-201ENST00000364621 146 ntBASIC-1.91□□□□□ -2.72
CCDC58Q4VC31 RNU6-214P-201ENST00000384130 107 ntBASIC-1.91□□□□□ -2.72
CCDC58Q4VC31 MTCO2P30-201ENST00000503662 364 ntBASIC-1.91□□□□□ -2.72
CCDC58Q4VC31 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-1.91□□□□□ -2.72
CCDC58Q4VC31 MTND4P7-201ENST00000523876 130 ntBASIC-1.91□□□□□ -2.72
CCDC58Q4VC31 OSBPL9P5-201ENST00000542581 171 ntBASIC-1.91□□□□□ -2.72
CCDC58Q4VC31 TUSC7.1-201ENST00000610969 165 ntBASIC-1.91□□□□□ -2.72
CCDC58Q4VC31 AL662814.1-201ENST00000617364 121 ntBASIC-1.91□□□□□ -2.72
CCDC58Q4VC31 AC132825.6-201ENST00000638861 357 ntBASIC-1.91□□□□□ -2.72
CCDC58Q4VC31 MIR409-201ENST00000362237 79 ntBASIC-1.92□□□□□ -2.72
CCDC58Q4VC31 RNA5SP403-201ENST00000363598 108 ntBASIC-1.92□□□□□ -2.72
CCDC58Q4VC31 SNORD115-30-201ENST00000364117 82 ntBASIC-1.92□□□□□ -2.72
CCDC58Q4VC31 SNORD24-201ENST00000383884 75 ntBASIC-1.92□□□□□ -2.72
CCDC58Q4VC31 RNY3P9-201ENST00000384727 106 ntBASIC-1.92□□□□□ -2.72
CCDC58Q4VC31 AL603914.1-201ENST00000401964 204 ntBASIC-1.92□□□□□ -2.72
CCDC58Q4VC31 MIR5692C1-201ENST00000585309 91 ntBASIC-1.92□□□□□ -2.72
CCDC58Q4VC31 AC092807.2-201ENST00000609367 243 ntBASIC-1.92□□□□□ -2.72
CCDC58Q4VC31 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC-1.92□□□□□ -2.72
CCDC58Q4VC31 uc_338.10-201ENST00000621872 182 ntBASIC-1.92□□□□□ -2.72
CCDC58Q4VC31 RNU6-195P-201ENST00000411352 109 ntBASIC-1.93□□□□□ -2.72
CCDC58Q4VC31 USP9YP30-201ENST00000430729 455 ntBASIC-1.93□□□□□ -2.72
CCDC58Q4VC31 RNU6-1194P-201ENST00000516208 104 ntBASIC-1.93□□□□□ -2.72
CCDC58Q4VC31 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.93□□□□□ -2.72
CCDC58Q4VC31 AP002963.1-201ENST00000530590 184 ntBASIC-1.93□□□□□ -2.72
CCDC58Q4VC31 AC103705.1-201ENST00000619013 241 ntBASIC-1.93□□□□□ -2.72
CCDC58Q4VC31 Y_RNA.172-201ENST00000363765 102 ntBASIC-1.94□□□□□ -2.72
CCDC58Q4VC31 RNU6-767P-201ENST00000384132 107 ntBASIC-1.94□□□□□ -2.72
CCDC58Q4VC31 RNU6-1242P-201ENST00000391052 103 ntBASIC-1.94□□□□□ -2.72
CCDC58Q4VC31 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC-1.94□□□□□ -2.72
CCDC58Q4VC31 DEFB131E-201ENST00000532329 154 ntBASIC-1.94□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 177.9 ms