Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 RNU6-101P-201ENST00000410323 104 ntBASIC0.73□□□□□ -2.29
SCN1BQ07699 RNU6-383P-201ENST00000410864 94 ntBASIC0.73□□□□□ -2.29
SCN1BQ07699 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.73□□□□□ -2.29
SCN1BQ07699 AL117351.2-201ENST00000513571 157 ntBASIC0.73□□□□□ -2.29
SCN1BQ07699 SCARNA8-201ENST00000515924 131 ntBASIC0.73□□□□□ -2.29
SCN1BQ07699 AL078603.1-201ENST00000603824 313 ntBASIC0.73□□□□□ -2.29
SCN1BQ07699 Y_RNA.105-201ENST00000363182 111 ntBASIC0.72□□□□□ -2.29
SCN1BQ07699 RNU6-396P-201ENST00000365369 105 ntBASIC0.72□□□□□ -2.29
SCN1BQ07699 Y_RNA.389-201ENST00000383924 113 ntBASIC0.72□□□□□ -2.29
SCN1BQ07699 Y_RNA.509-201ENST00000384506 99 ntBASIC0.72□□□□□ -2.29
SCN1BQ07699 AC023449.1-201ENST00000454464 154 ntBASIC0.72□□□□□ -2.29
SCN1BQ07699 RNU7-25P-201ENST00000516544 62 ntBASIC0.72□□□□□ -2.29
SCN1BQ07699 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.72□□□□□ -2.29
SCN1BQ07699 RNU6-110P-201ENST00000384508 104 ntBASIC0.71□□□□□ -2.3
SCN1BQ07699 Y_RNA.581-201ENST00000391017 97 ntBASIC0.71□□□□□ -2.3
SCN1BQ07699 MIR1827-201ENST00000408549 66 ntBASIC0.71□□□□□ -2.3
SCN1BQ07699 MIR1252-201ENST00000408861 65 ntBASIC0.71□□□□□ -2.3
SCN1BQ07699 RNU6-847P-201ENST00000411115 108 ntBASIC0.71□□□□□ -2.3
SCN1BQ07699 COX6CP6-201ENST00000490840 228 ntBASIC0.71□□□□□ -2.3
SCN1BQ07699 AL512605.2-201ENST00000592972 256 ntBASIC0.71□□□□□ -2.3
SCN1BQ07699 AC243994.1-201ENST00000618627 109 ntBASIC0.71□□□□□ -2.3
SCN1BQ07699 Y_RNA.28-201ENST00000362554 111 ntBASIC0.7□□□□□ -2.3
SCN1BQ07699 Y_RNA.168-201ENST00000363740 102 ntBASIC0.7□□□□□ -2.3
SCN1BQ07699 RNU6-392P-201ENST00000364926 101 ntBASIC0.7□□□□□ -2.3
SCN1BQ07699 RNU6-290P-201ENST00000365212 101 ntBASIC0.7□□□□□ -2.3
SCN1BQ07699 RNU6-144P-201ENST00000383951 107 ntBASIC0.7□□□□□ -2.3
SCN1BQ07699 MIR532-201ENST00000385025 91 ntBASIC0.7□□□□□ -2.3
SCN1BQ07699 MIR548O-201ENST00000408583 114 ntBASIC0.7□□□□□ -2.3
SCN1BQ07699 RNU6-121P-201ENST00000410525 99 ntBASIC0.7□□□□□ -2.3
SCN1BQ07699 Y_RNA.637-201ENST00000459424 114 ntBASIC0.7□□□□□ -2.3
SCN1BQ07699 RNU7-149P-201ENST00000516739 59 ntBASIC0.7□□□□□ -2.3
SCN1BQ07699 SNORA40.15-201ENST00000516884 107 ntBASIC0.7□□□□□ -2.3
SCN1BQ07699 Y_RNA.721-201ENST00000517207 102 ntBASIC0.7□□□□□ -2.3
SCN1BQ07699 AC013791.1-201ENST00000616619 62 ntBASIC0.7□□□□□ -2.3
SCN1BQ07699 AC022140.2-201ENST00000623500 188 ntBASIC0.7□□□□□ -2.3
SCN1BQ07699 MIR367-201ENST00000362299 68 ntBASIC0.69□□□□□ -2.3
SCN1BQ07699 Y_RNA.14-201ENST00000362415 103 ntBASIC0.69□□□□□ -2.3
SCN1BQ07699 RNU6-1272P-201ENST00000362776 107 ntBASIC0.69□□□□□ -2.3
SCN1BQ07699 Y_RNA.547-201ENST00000384654 119 ntBASIC0.69□□□□□ -2.3
SCN1BQ07699 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.69□□□□□ -2.3
SCN1BQ07699 MTND4LP11-201ENST00000422184 280 ntBASIC0.69□□□□□ -2.3
SCN1BQ07699 RNU6-113P-201ENST00000516653 101 ntBASIC0.69□□□□□ -2.3
SCN1BQ07699 AL049861.1-201ENST00000603130 150 ntBASIC0.69□□□□□ -2.3
SCN1BQ07699 FAM71BP1-201ENST00000604431 523 ntBASIC0.69□□□□□ -2.3
SCN1BQ07699 uc_338.4-201ENST00000616635 176 ntBASIC0.69□□□□□ -2.3
SCN1BQ07699 AL160413.1-201ENST00000622780 310 ntBASIC0.69□□□□□ -2.3
SCN1BQ07699 MIR6866-201ENST00000638146 69 ntBASIC0.69□□□□□ -2.3
SCN1BQ07699 MIR1-1-201ENST00000362147 71 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 SNORA25.1-201ENST00000362326 128 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 Y_RNA.394-201ENST00000383942 103 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 RNU6-514P-201ENST00000384208 107 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 RNU6-474P-201ENST00000384243 107 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 SNORD105-201ENST00000386910 85 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 RNU6-205P-201ENST00000390858 107 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 RNA5SP247-201ENST00000411181 105 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 BTF3P11-201ENST00000426582 477 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 Y_RNA.631-201ENST00000459607 101 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.68□□□□□ -2.3
SCN1BQ07699 RNU2-13P-201ENST00000515909 113 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 AC011195.1-201ENST00000578177 177 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 MIR3973-201ENST00000579824 107 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 AL021707.8-201ENST00000609428 183 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 MIR6857-201ENST00000613267 93 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 MIR6734-201ENST00000621166 68 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 AC068700.1-201ENST00000565862 3754 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 MTND4P29-201ENST00000503122 1372 ntBASIC0.68□□□□□ -2.3
SCN1BQ07699 Y_RNA.191-201ENST00000363972 113 ntBASIC0.67□□□□□ -2.3
SCN1BQ07699 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
SCN1BQ07699 RNU1-119P-201ENST00000391122 165 ntBASIC0.67□□□□□ -2.3
SCN1BQ07699 AC244098.3-201ENST00000424803 96 ntBASIC0.67□□□□□ -2.3
SCN1BQ07699 MTND5P15-201ENST00000434246 349 ntBASIC0.67□□□□□ -2.3
SCN1BQ07699 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.67□□□□□ -2.3
SCN1BQ07699 AC098869.1-201ENST00000481627 292 ntBASIC0.67□□□□□ -2.3
SCN1BQ07699 AC091959.1-201ENST00000495857 238 ntBASIC0.67□□□□□ -2.3
SCN1BQ07699 RNU2-31P-201ENST00000516954 155 ntBASIC0.67□□□□□ -2.3
SCN1BQ07699 RNU6-988P-201ENST00000519081 107 ntBASIC0.67□□□□□ -2.3
SCN1BQ07699 AP000753.3-201ENST00000604083 169 ntBASIC0.67□□□□□ -2.3
SCN1BQ07699 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
SCN1BQ07699 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.66□□□□□ -2.3
SCN1BQ07699 MIR377-201ENST00000362145 69 ntBASIC0.66□□□□□ -2.3
SCN1BQ07699 SNORD45.3-201ENST00000363836 72 ntBASIC0.66□□□□□ -2.3
SCN1BQ07699 Y_RNA.269-201ENST00000364685 89 ntBASIC0.66□□□□□ -2.3
SCN1BQ07699 Y_RNA.293-201ENST00000364908 93 ntBASIC0.66□□□□□ -2.3
SCN1BQ07699 Y_RNA.376-201ENST00000365638 108 ntBASIC0.66□□□□□ -2.3
SCN1BQ07699 Y_RNA.541-201ENST00000384640 113 ntBASIC0.66□□□□□ -2.3
SCN1BQ07699 SNORA53-201ENST00000391141 249 ntBASIC0.66□□□□□ -2.3
SCN1BQ07699 snoU13.21-201ENST00000459368 105 ntBASIC0.66□□□□□ -2.3
SCN1BQ07699 Y_RNA.666-201ENST00000516187 112 ntBASIC0.66□□□□□ -2.3
SCN1BQ07699 MIR5692C2-201ENST00000577959 77 ntBASIC0.66□□□□□ -2.3
SCN1BQ07699 MIR4724-201ENST00000579485 89 ntBASIC0.66□□□□□ -2.3
SCN1BQ07699 AC037487.3-201ENST00000606668 112 ntBASIC0.66□□□□□ -2.3
SCN1BQ07699 Y_RNA.238-201ENST00000364441 102 ntBASIC0.65□□□□□ -2.31
SCN1BQ07699 Y_RNA.241-201ENST00000364470 117 ntBASIC0.65□□□□□ -2.31
SCN1BQ07699 Y_RNA.380-201ENST00000365663 111 ntBASIC0.65□□□□□ -2.31
SCN1BQ07699 RNU6-662P-201ENST00000384253 104 ntBASIC0.65□□□□□ -2.31
SCN1BQ07699 RNU6-125P-201ENST00000384505 107 ntBASIC0.65□□□□□ -2.31
SCN1BQ07699 MIR215-201ENST00000384858 110 ntBASIC0.65□□□□□ -2.31
SCN1BQ07699 MIR499A-201ENST00000384903 122 ntBASIC0.65□□□□□ -2.31
SCN1BQ07699 MT-TN-201ENST00000387400 73 ntBASIC0.65□□□□□ -2.31
SCN1BQ07699 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms