Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RNA5SP252-201ENST00000391131 119 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 RNA5SP504-201ENST00000410676 117 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 Y_RNA.630-201ENST00000411370 108 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 AC010154.1-201ENST00000425857 269 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 AL161651.1-201ENST00000440882 223 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.29□□□□□ -2.2
COL4A4P53420 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.29□□□□□ -2.2
COL4A4P53420 RNU5F-4P-201ENST00000516581 114 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 RNU6-1098P-201ENST00000516772 96 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.29□□□□□ -2.2
COL4A4P53420 CYCSP26-201ENST00000534107 320 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC1.29□□□□□ -2.2
COL4A4P53420 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.29□□□□□ -2.2
COL4A4P53420 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.29□□□□□ -2.2
COL4A4P53420 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.29□□□□□ -2.2
COL4A4P53420 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.28□□□□□ -2.2
COL4A4P53420 RNU6-1323P-201ENST00000384025 107 ntBASIC1.28□□□□□ -2.2
COL4A4P53420 SNORD116-13-201ENST00000384408 92 ntBASIC1.28□□□□□ -2.2
COL4A4P53420 RNA5SP465-201ENST00000391195 109 ntBASIC1.28□□□□□ -2.2
COL4A4P53420 RNU6-855P-201ENST00000410395 104 ntBASIC1.28□□□□□ -2.2
COL4A4P53420 AL445687.1-201ENST00000439946 251 ntBASIC1.28□□□□□ -2.2
COL4A4P53420 RPS29P23-201ENST00000458635 123 ntBASIC1.28□□□□□ -2.2
COL4A4P53420 RNU6-221P-201ENST00000459541 99 ntBASIC1.28□□□□□ -2.2
COL4A4P53420 AC107626.1-201ENST00000471084 183 ntBASIC1.28□□□□□ -2.2
COL4A4P53420 RPS27P21-201ENST00000486977 252 ntBASIC1.28□□□□□ -2.2
COL4A4P53420 RNU6-197P-201ENST00000516680 100 ntBASIC1.28□□□□□ -2.2
COL4A4P53420 RNU7-116P-201ENST00000516940 62 ntBASIC1.28□□□□□ -2.2
COL4A4P53420 AP001328.1-201ENST00000528550 176 ntBASIC1.28□□□□□ -2.2
COL4A4P53420 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC1.28□□□□□ -2.2
COL4A4P53420 MIR378D2-201ENST00000580636 98 ntBASIC1.28□□□□□ -2.2
COL4A4P53420 AC005562.2-201ENST00000618264 111 ntBASIC1.28□□□□□ -2.2
COL4A4P53420 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
COL4A4P53420 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.28□□□□□ -2.21
COL4A4P53420 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
COL4A4P53420 RNU6-1255P-201ENST00000363434 112 ntBASIC1.27□□□□□ -2.21
COL4A4P53420 SNORD18B-201ENST00000365659 72 ntBASIC1.27□□□□□ -2.21
COL4A4P53420 RNU6-198P-201ENST00000384258 104 ntBASIC1.27□□□□□ -2.21
COL4A4P53420 SNORD37.2-201ENST00000391075 66 ntBASIC1.27□□□□□ -2.21
COL4A4P53420 MIR1283-1-201ENST00000408494 87 ntBASIC1.27□□□□□ -2.21
COL4A4P53420 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.27□□□□□ -2.21
COL4A4P53420 AC098934.3-201ENST00000430450 190 ntBASIC1.27□□□□□ -2.21
COL4A4P53420 AC023790.1-201ENST00000482174 347 ntBASIC1.27□□□□□ -2.21
COL4A4P53420 RPL23AP54-201ENST00000495129 419 ntBASIC1.27□□□□□ -2.21
COL4A4P53420 AC145146.1-201ENST00000496370 254 ntBASIC1.27□□□□□ -2.21
COL4A4P53420 RN7SKP19-201ENST00000516016 252 ntBASIC1.27□□□□□ -2.21
COL4A4P53420 IGKV1-22-201ENST00000524313 326 ntBASIC1.27□□□□□ -2.21
COL4A4P53420 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.27□□□□□ -2.21
COL4A4P53420 AL670379.3-201ENST00000605040 251 ntBASIC1.27□□□□□ -2.21
COL4A4P53420 MTND5P32-201ENST00000560711 1802 ntBASIC1.27□□□□□ -2.21
COL4A4P53420 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.26□□□□□ -2.21
COL4A4P53420 RNU1-105P-201ENST00000363470 161 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 Y_RNA.229-201ENST00000364347 113 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 RNU6-1305P-201ENST00000364353 104 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 Y_RNA.258-201ENST00000364613 105 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 RNU6-136P-201ENST00000384663 107 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 RNU6-997P-201ENST00000384725 107 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 RNA5SP496-201ENST00000391240 109 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 RNU6-1064P-201ENST00000410626 104 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 AC097463.2-201ENST00000421074 142 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 AC063976.4-201ENST00000421971 163 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 TOMM22P2-201ENST00000430735 237 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.26□□□□□ -2.21
COL4A4P53420 AC023449.1-201ENST00000454464 154 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 RNU7-107P-201ENST00000459121 61 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 MTND5P34-201ENST00000568888 325 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 MIR3609-201ENST00000582661 80 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 U7.2-201ENST00000607576 63 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 MIR548AY-201ENST00000617669 107 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 AC068647.2-201ENST00000637380 353 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 SNORA27.1-201ENST00000362604 124 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 SNORA63.4-201ENST00000362763 126 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 SNORA25.7-201ENST00000364375 127 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 VTRNA1-3-201ENST00000365645 89 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 RNU6-1264P-201ENST00000383891 107 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 RNU6-975P-201ENST00000384296 105 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 AL603914.1-201ENST00000401964 204 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 RNA5SP511-201ENST00000410487 115 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 Y_RNA.617-201ENST00000410920 90 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.26□□□□□ -2.21
COL4A4P53420 RNU6-437P-201ENST00000459408 95 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 RNU7-23P-201ENST00000459465 62 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 RNU6-589P-201ENST00000516485 107 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 RNU1-117P-201ENST00000517041 158 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 AC131055.1-201ENST00000584626 316 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 AL590095.2-201ENST00000604136 117 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 AC073413.2-201ENST00000604332 360 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 AC011603.4-201ENST00000611325 277 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 uc_338.4-201ENST00000616635 176 ntBASIC1.26□□□□□ -2.21
COL4A4P53420 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.25□□□□□ -2.21
COL4A4P53420 RNU6-235P-201ENST00000362644 107 ntBASIC1.25□□□□□ -2.21
COL4A4P53420 RNU6-755P-201ENST00000364400 103 ntBASIC1.25□□□□□ -2.21
COL4A4P53420 Y_RNA.634-201ENST00000364811 113 ntBASIC1.25□□□□□ -2.21
COL4A4P53420 RNU1-148P-201ENST00000384472 162 ntBASIC1.25□□□□□ -2.21
COL4A4P53420 SNORA75.5-201ENST00000391291 81 ntBASIC1.25□□□□□ -2.21
COL4A4P53420 MIR300-201ENST00000401138 83 ntBASIC1.25□□□□□ -2.21
COL4A4P53420 RNA5SP89-201ENST00000410300 108 ntBASIC1.25□□□□□ -2.21
COL4A4P53420 Y_RNA.622-201ENST00000411091 108 ntBASIC1.25□□□□□ -2.21
COL4A4P53420 RPL31P63-201ENST00000422565 375 ntBASIC1.25□□□□□ -2.21
COL4A4P53420 MICF-203ENST00000432679 129 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms