Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.2□□□□□ -2.22
SOX3P41225 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.2□□□□□ -2.22
SOX3P41225 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.2□□□□□ -2.22
SOX3P41225 RNY3P16-201ENST00000516338 101 ntBASIC1.2□□□□□ -2.22
SOX3P41225 AC004817.2-201ENST00000561794 651 ntBASIC1.2□□□□□ -2.22
SOX3P41225 MIR4724-201ENST00000579485 89 ntBASIC1.2□□□□□ -2.22
SOX3P41225 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SOX3P41225 Y_RNA.20-201ENST00000362479 113 ntBASIC1.19□□□□□ -2.22
SOX3P41225 Y_RNA.293-201ENST00000364908 93 ntBASIC1.19□□□□□ -2.22
SOX3P41225 AC015922.2-201ENST00000435593 184 ntBASIC1.19□□□□□ -2.22
SOX3P41225 HMGN2P32-201ENST00000444648 269 ntBASIC1.19□□□□□ -2.22
SOX3P41225 RPS29P29-201ENST00000456396 171 ntBASIC1.19□□□□□ -2.22
SOX3P41225 RPL30P7-201ENST00000479312 323 ntBASIC1.19□□□□□ -2.22
SOX3P41225 RNU6-322P-201ENST00000516010 103 ntBASIC1.19□□□□□ -2.22
SOX3P41225 RNU6-1007P-201ENST00000516586 107 ntBASIC1.19□□□□□ -2.22
SOX3P41225 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.19□□□□□ -2.22
SOX3P41225 MIR3660-201ENST00000584845 100 ntBASIC1.19□□□□□ -2.22
SOX3P41225 AC008507.4-201ENST00000585464 127 ntBASIC1.19□□□□□ -2.22
SOX3P41225 AL021707.8-201ENST00000609428 183 ntBASIC1.19□□□□□ -2.22
SOX3P41225 GHRLOS.1-201ENST00000610995 70 ntBASIC1.19□□□□□ -2.22
SOX3P41225 AL442644.1-201ENST00000454390 3105 ntBASIC1.19□□□□□ -2.22
SOX3P41225 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
SOX3P41225 Y_RNA.4-201ENST00000362333 112 ntBASIC1.18□□□□□ -2.22
SOX3P41225 RNU6-653P-201ENST00000363074 106 ntBASIC1.18□□□□□ -2.22
SOX3P41225 Y_RNA.164-201ENST00000363709 102 ntBASIC1.18□□□□□ -2.22
SOX3P41225 RNU6-379P-201ENST00000363813 104 ntBASIC1.18□□□□□ -2.22
SOX3P41225 SNORD14E-201ENST00000364009 85 ntBASIC1.18□□□□□ -2.22
SOX3P41225 SNORD41-201ENST00000386967 70 ntBASIC1.18□□□□□ -2.22
SOX3P41225 SNORA40.6-201ENST00000391153 128 ntBASIC1.18□□□□□ -2.22
SOX3P41225 AL451046.2-201ENST00000403074 277 ntBASIC1.18□□□□□ -2.22
SOX3P41225 RNU6-1023P-201ENST00000516137 106 ntBASIC1.18□□□□□ -2.22
SOX3P41225 RNU6-922P-201ENST00000516753 99 ntBASIC1.18□□□□□ -2.22
SOX3P41225 AC090821.2-201ENST00000523552 176 ntBASIC1.18□□□□□ -2.22
SOX3P41225 AC100767.1-201ENST00000528178 123 ntBASIC1.18□□□□□ -2.22
SOX3P41225 FAM106DP-201ENST00000586416 501 ntBASIC1.18□□□□□ -2.22
SOX3P41225 Y_RNA.802-201ENST00000614892 130 ntBASIC1.18□□□□□ -2.22
SOX3P41225 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.18□□□□□ -2.22
SOX3P41225 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.17□□□□□ -2.22
SOX3P41225 MIR367-201ENST00000362299 68 ntBASIC1.17□□□□□ -2.22
SOX3P41225 Y_RNA.65-201ENST00000362846 100 ntBASIC1.17□□□□□ -2.22
SOX3P41225 snoU2_19.4-201ENST00000364329 80 ntBASIC1.17□□□□□ -2.22
SOX3P41225 RNY4P28-201ENST00000365281 93 ntBASIC1.17□□□□□ -2.22
SOX3P41225 MIR626-201ENST00000385032 94 ntBASIC1.17□□□□□ -2.22
SOX3P41225 MIR150-201ENST00000385048 84 ntBASIC1.17□□□□□ -2.22
SOX3P41225 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
SOX3P41225 Y_RNA.590-201ENST00000410140 107 ntBASIC1.17□□□□□ -2.22
SOX3P41225 SNRPGP14-201ENST00000435400 219 ntBASIC1.17□□□□□ -2.22
SOX3P41225 SCARNA8-201ENST00000515924 131 ntBASIC1.17□□□□□ -2.22
SOX3P41225 AC090142.3-201ENST00000519012 385 ntBASIC1.17□□□□□ -2.22
SOX3P41225 MIR4781-201ENST00000585250 76 ntBASIC1.17□□□□□ -2.22
SOX3P41225 AL365265.1-201ENST00000621045 234 ntBASIC1.17□□□□□ -2.22
SOX3P41225 Y_RNA.242-201ENST00000364473 110 ntBASIC1.16□□□□□ -2.22
SOX3P41225 Y_RNA.292-201ENST00000364904 97 ntBASIC1.16□□□□□ -2.22
SOX3P41225 RNU6-442P-201ENST00000383968 104 ntBASIC1.16□□□□□ -2.22
SOX3P41225 SNORA8.3-201ENST00000384679 139 ntBASIC1.16□□□□□ -2.22
SOX3P41225 MIR136-201ENST00000385207 82 ntBASIC1.16□□□□□ -2.22
SOX3P41225 MIR548H3-201ENST00000408771 118 ntBASIC1.16□□□□□ -2.22
SOX3P41225 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.16□□□□□ -2.22
SOX3P41225 AC023449.1-201ENST00000454464 154 ntBASIC1.16□□□□□ -2.22
SOX3P41225 Y_RNA.679-201ENST00000516416 91 ntBASIC1.16□□□□□ -2.22
SOX3P41225 RNU6-453P-201ENST00000516819 85 ntBASIC1.16□□□□□ -2.22
SOX3P41225 RNU6-165P-201ENST00000517170 99 ntBASIC1.16□□□□□ -2.22
SOX3P41225 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.16□□□□□ -2.22
SOX3P41225 CYP3A52P-201ENST00000563326 91 ntBASIC1.16□□□□□ -2.22
SOX3P41225 AC006006.1-201ENST00000603082 144 ntBASIC1.16□□□□□ -2.22
SOX3P41225 BX284668.6-201ENST00000606899 438 ntBASIC1.16□□□□□ -2.22
SOX3P41225 MIR6078-201ENST00000611069 100 ntBASIC1.16□□□□□ -2.22
SOX3P41225 uc_338.4-201ENST00000616635 176 ntBASIC1.16□□□□□ -2.22
SOX3P41225 AC078938.1-201ENST00000620993 318 ntBASIC1.16□□□□□ -2.22
SOX3P41225 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
SOX3P41225 Y_RNA.24-201ENST00000362508 103 ntBASIC1.15□□□□□ -2.23
SOX3P41225 RNY1P10-201ENST00000363268 113 ntBASIC1.15□□□□□ -2.23
SOX3P41225 RNU6-392P-201ENST00000364926 101 ntBASIC1.15□□□□□ -2.23
SOX3P41225 MIR516B2-201ENST00000385190 85 ntBASIC1.15□□□□□ -2.23
SOX3P41225 MT-TT-201ENST00000387460 66 ntBASIC1.15□□□□□ -2.23
SOX3P41225 SNORD72-201ENST00000390994 80 ntBASIC1.15□□□□□ -2.23
SOX3P41225 RNU6-1271P-201ENST00000517049 105 ntBASIC1.15□□□□□ -2.23
SOX3P41225 AL442067.1-201ENST00000613261 223 ntBASIC1.15□□□□□ -2.23
SOX3P41225 MIR26B-201ENST00000362251 77 ntBASIC1.14□□□□□ -2.23
SOX3P41225 MIR337-201ENST00000362281 93 ntBASIC1.14□□□□□ -2.23
SOX3P41225 RNU6-268P-201ENST00000364174 107 ntBASIC1.14□□□□□ -2.23
SOX3P41225 Y_RNA.304-201ENST00000365011 112 ntBASIC1.14□□□□□ -2.23
SOX3P41225 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.14□□□□□ -2.23
SOX3P41225 AC245047.8-201ENST00000456455 284 ntBASIC1.14□□□□□ -2.23
SOX3P41225 RNU6-830P-201ENST00000516353 107 ntBASIC1.14□□□□□ -2.23
SOX3P41225 RN7SKP88-201ENST00000516847 250 ntBASIC1.14□□□□□ -2.23
SOX3P41225 RNU6-388P-201ENST00000517012 105 ntBASIC1.14□□□□□ -2.23
SOX3P41225 RNU6-389P-201ENST00000517048 105 ntBASIC1.14□□□□□ -2.23
SOX3P41225 AC130289.1-201ENST00000577321 73 ntBASIC1.14□□□□□ -2.23
SOX3P41225 AL357312.1-201ENST00000603879 298 ntBASIC1.14□□□□□ -2.23
SOX3P41225 7SK.8-201ENST00000612110 250 ntBASIC1.14□□□□□ -2.23
SOX3P41225 AC006441.5-201ENST00000612680 209 ntBASIC1.14□□□□□ -2.23
SOX3P41225 7SK.11-201ENST00000615477 250 ntBASIC1.14□□□□□ -2.23
SOX3P41225 7SK.13-201ENST00000622040 250 ntBASIC1.14□□□□□ -2.23
SOX3P41225 Y_RNA.188-201ENST00000363952 111 ntBASIC1.13□□□□□ -2.23
SOX3P41225 RNY1-201ENST00000364228 113 ntBASIC1.13□□□□□ -2.23
SOX3P41225 SNORA20.1-201ENST00000364790 130 ntBASIC1.13□□□□□ -2.23
SOX3P41225 RNU6-1138P-201ENST00000365359 106 ntBASIC1.13□□□□□ -2.23
SOX3P41225 SNORD38C-201ENST00000384381 69 ntBASIC1.13□□□□□ -2.23
SOX3P41225 MT-TG-201ENST00000387429 68 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms