Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RNU6-203P-201ENST00000384038 104 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 Y_RNA.488-201ENST00000384403 102 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 MIR548A2-201ENST00000384956 97 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 MIR569-201ENST00000385228 96 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 AC244636.1-201ENST00000421152 228 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.63□□□□□ -2.15
HOXD3P31249 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
HOXD3P31249 AL603825.1-201ENST00000438481 80 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.63□□□□□ -2.15
HOXD3P31249 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.63□□□□□ -2.15
HOXD3P31249 AC092991.1-201ENST00000477176 376 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 AC090255.1-201ENST00000495779 349 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.63□□□□□ -2.15
HOXD3P31249 AC007751.1-201ENST00000529260 376 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 AL160236.1-201ENST00000556317 195 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 AC112693.2-201ENST00000556538 232 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 MIR4709-201ENST00000577272 72 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 MIR4662B-201ENST00000579498 81 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 AC095038.3-201ENST00000634439 195 ntBASIC1.63□□□□□ -2.15
HOXD3P31249 RNU6-199P-201ENST00000362954 107 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 RNU6-442P-201ENST00000383968 104 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 RNU6-439P-201ENST00000384188 106 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 MIR802-201ENST00000390235 94 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 AL392103.1-201ENST00000447000 198 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 RNU7-197P-201ENST00000458836 62 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 RNU6-504P-201ENST00000516568 104 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 RNA5SP481-201ENST00000516814 122 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 RNU6-295P-201ENST00000516901 104 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 MIR4778-201ENST00000577635 80 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 MIR548X2-201ENST00000579776 100 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 MIR3910-1-201ENST00000580936 111 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 MIR3129-201ENST00000581095 76 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 AC087685.1-201ENST00000587507 141 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.62□□□□□ -2.15
HOXD3P31249 AC092881.1-201ENST00000638218 2733 ntBASIC1.62□□□□□ -2.15
HOXD3P31249 RNU6-597P-201ENST00000365620 102 ntBASIC1.61□□□□□ -2.15
HOXD3P31249 RNU4-52P-201ENST00000384209 138 ntBASIC1.61□□□□□ -2.15
HOXD3P31249 Y_RNA.497-201ENST00000384447 98 ntBASIC1.61□□□□□ -2.15
HOXD3P31249 RNU6-460P-201ENST00000391158 108 ntBASIC1.61□□□□□ -2.15
HOXD3P31249 RNU2-40P-201ENST00000410833 196 ntBASIC1.61□□□□□ -2.15
HOXD3P31249 RNU7-25P-201ENST00000516544 62 ntBASIC1.61□□□□□ -2.15
HOXD3P31249 AC006441.5-201ENST00000612680 209 ntBASIC1.61□□□□□ -2.15
HOXD3P31249 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.61□□□□□ -2.15
HOXD3P31249 ZNF720P1-201ENST00000562403 1939 ntBASIC1.61□□□□□ -2.15
HOXD3P31249 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.61□□□□□ -2.15
HOXD3P31249 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.6□□□□□ -2.15
HOXD3P31249 RNU6-704P-201ENST00000364162 103 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 RNU6-950P-201ENST00000384651 107 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 Y_RNA.568-201ENST00000384742 113 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 MIR518F-201ENST00000384973 87 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 MIR613-201ENST00000385248 95 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
HOXD3P31249 RNU6-360P-201ENST00000390944 104 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 SNORA26-201ENST00000391286 122 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 MIR548O-201ENST00000408583 114 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 HMGN2P38-201ENST00000423806 265 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 AF228730.3-201ENST00000436691 102 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 SNRPGP13-201ENST00000442212 177 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 AC079804.2-201ENST00000490376 200 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 CYCTP-201ENST00000504253 315 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 Y_RNA.676-201ENST00000516393 96 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 MIR3646-201ENST00000578301 84 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 Y_RNA.783-201ENST00000613546 102 ntBASIC1.6□□□□□ -2.15
HOXD3P31249 AL157777.2-201ENST00000258070 137 ntBASIC1.59□□□□□ -2.15
HOXD3P31249 RNU6-888P-201ENST00000363010 101 ntBASIC1.59□□□□□ -2.15
HOXD3P31249 SNORA25.7-201ENST00000364375 127 ntBASIC1.59□□□□□ -2.15
HOXD3P31249 Y_RNA.251-201ENST00000364551 99 ntBASIC1.59□□□□□ -2.15
HOXD3P31249 Y_RNA.336-201ENST00000365307 109 ntBASIC1.59□□□□□ -2.15
HOXD3P31249 Y_RNA.343-201ENST00000365354 112 ntBASIC1.59□□□□□ -2.15
HOXD3P31249 Y_RNA.547-201ENST00000384654 119 ntBASIC1.59□□□□□ -2.15
HOXD3P31249 MIR891A-201ENST00000401237 79 ntBASIC1.59□□□□□ -2.15
HOXD3P31249 MIR513C-201ENST00000401352 84 ntBASIC1.59□□□□□ -2.15
HOXD3P31249 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.59□□□□□ -2.15
HOXD3P31249 PGBD4P5-201ENST00000445958 426 ntBASIC1.59□□□□□ -2.15
HOXD3P31249 AC104435.1-201ENST00000483483 166 ntBASIC1.59□□□□□ -2.15
HOXD3P31249 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.59□□□□□ -2.15
HOXD3P31249 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.59□□□□□ -2.15
HOXD3P31249 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.59□□□□□ -2.15
HOXD3P31249 AC027279.3-201ENST00000625055 122 ntBASIC1.59□□□□□ -2.15
HOXD3P31249 MIR376A2-201ENST00000636782 80 ntBASIC1.59□□□□□ -2.15
HOXD3P31249 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.59□□□□□ -2.15
HOXD3P31249 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
HOXD3P31249 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HOXD3P31249 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
HOXD3P31249 RNU6-508P-201ENST00000363231 103 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 RNU6-833P-201ENST00000363486 107 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 RNU6-457P-201ENST00000363999 107 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 Y_RNA.338-201ENST00000365320 114 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 Y_RNA.542-201ENST00000384641 111 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 MIR583-201ENST00000384846 75 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 MIR516B2-201ENST00000385190 85 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 SNORD77.3-201ENST00000391113 65 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 SNORA75.5-201ENST00000391291 81 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 RNU6-257P-201ENST00000410238 98 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 AC015922.2-201ENST00000435593 184 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 AC090142.3-201ENST00000519012 385 ntBASIC1.58□□□□□ -2.16
HOXD3P31249 SUMO2P16-201ENST00000519475 264 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms