Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MIR4264-201ENST00000583520 66 ntBASIC0.67□□□□□ -2.3
BDNFP23560 Y_RNA.496-201ENST00000384444 101 ntBASIC0.66□□□□□ -2.3
BDNFP23560 MTND1P14-201ENST00000427400 950 ntBASIC0.66□□□□□ -2.3
BDNFP23560 MTND4LP30-201ENST00000454092 297 ntBASIC0.66□□□□□ -2.3
BDNFP23560 RNU7-181P-201ENST00000517234 74 ntBASIC0.66□□□□□ -2.3
BDNFP23560 AC040926.1-201ENST00000530195 238 ntBASIC0.66□□□□□ -2.3
BDNFP23560 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.66□□□□□ -2.3
BDNFP23560 AC005357.1-201ENST00000588399 301 ntBASIC0.66□□□□□ -2.3
BDNFP23560 uc_338.4-201ENST00000616635 176 ntBASIC0.66□□□□□ -2.3
BDNFP23560 AC243994.1-201ENST00000618627 109 ntBASIC0.66□□□□□ -2.3
BDNFP23560 Y_RNA.263-201ENST00000364659 114 ntBASIC0.65□□□□□ -2.31
BDNFP23560 SNORA36.2-201ENST00000384004 127 ntBASIC0.65□□□□□ -2.31
BDNFP23560 Y_RNA.424-201ENST00000384063 103 ntBASIC0.65□□□□□ -2.31
BDNFP23560 SNORD11-201ENST00000459124 84 ntBASIC0.65□□□□□ -2.31
BDNFP23560 AL355297.3-201ENST00000604082 446 ntBASIC0.65□□□□□ -2.31
BDNFP23560 MTND1P7-201ENST00000632801 297 ntBASIC0.65□□□□□ -2.31
BDNFP23560 RNU4-80P-201ENST00000363200 141 ntBASIC0.64□□□□□ -2.31
BDNFP23560 SNORA63C-201ENST00000364578 129 ntBASIC0.64□□□□□ -2.31
BDNFP23560 Y_RNA.315-201ENST00000365117 102 ntBASIC0.64□□□□□ -2.31
BDNFP23560 SNORA63.7-201ENST00000365579 123 ntBASIC0.64□□□□□ -2.31
BDNFP23560 RNU6-945P-201ENST00000383947 107 ntBASIC0.64□□□□□ -2.31
BDNFP23560 RNU6-342P-201ENST00000384521 104 ntBASIC0.64□□□□□ -2.31
BDNFP23560 Y_RNA.540-201ENST00000384638 111 ntBASIC0.64□□□□□ -2.31
BDNFP23560 MIR570-201ENST00000384917 97 ntBASIC0.64□□□□□ -2.31
BDNFP23560 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.64□□□□□ -2.31
BDNFP23560 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.64□□□□□ -2.31
BDNFP23560 snoU13.16-201ENST00000459350 104 ntBASIC0.64□□□□□ -2.31
BDNFP23560 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.64□□□□□ -2.31
BDNFP23560 RNU6-1237P-201ENST00000384777 107 ntBASIC0.63□□□□□ -2.31
BDNFP23560 RN7SKP12-201ENST00000516275 143 ntBASIC0.63□□□□□ -2.31
BDNFP23560 RNA5SP480-201ENST00000516840 109 ntBASIC0.63□□□□□ -2.31
BDNFP23560 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.63□□□□□ -2.31
BDNFP23560 MIR548AO-201ENST00000579992 96 ntBASIC0.63□□□□□ -2.31
BDNFP23560 AC006157.1-201ENST00000611750 366 ntBASIC0.63□□□□□ -2.31
BDNFP23560 uc_338.17-201ENST00000619633 179 ntBASIC0.63□□□□□ -2.31
BDNFP23560 AC104985.2-201ENST00000620598 500 ntBASIC0.63□□□□□ -2.31
BDNFP23560 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.63□□□□□ -2.31
BDNFP23560 Y_RNA.14-201ENST00000362415 103 ntBASIC0.62□□□□□ -2.31
BDNFP23560 RNU6-1205P-201ENST00000363625 106 ntBASIC0.62□□□□□ -2.31
BDNFP23560 RNU6-580P-201ENST00000365159 107 ntBASIC0.62□□□□□ -2.31
BDNFP23560 Y_RNA.356-201ENST00000365475 113 ntBASIC0.62□□□□□ -2.31
BDNFP23560 Y_RNA.390-201ENST00000383932 102 ntBASIC0.62□□□□□ -2.31
BDNFP23560 SNORD72-201ENST00000390994 80 ntBASIC0.62□□□□□ -2.31
BDNFP23560 RNA5SP496-201ENST00000391240 109 ntBASIC0.62□□□□□ -2.31
BDNFP23560 RNA5SP95-201ENST00000410319 137 ntBASIC0.62□□□□□ -2.31
BDNFP23560 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.62□□□□□ -2.31
BDNFP23560 RNU4-57P-201ENST00000515980 135 ntBASIC0.62□□□□□ -2.31
BDNFP23560 RNU6-977P-201ENST00000516411 103 ntBASIC0.62□□□□□ -2.31
BDNFP23560 RNU6-126P-201ENST00000516685 103 ntBASIC0.62□□□□□ -2.31
BDNFP23560 SNORD58B-201ENST00000607313 66 ntBASIC0.62□□□□□ -2.31
BDNFP23560 PVT1_3.1-201ENST00000620853 95 ntBASIC0.62□□□□□ -2.31
BDNFP23560 Y_RNA.5-201ENST00000362334 102 ntBASIC0.61□□□□□ -2.31
BDNFP23560 MIR1302-11-201ENST00000408051 138 ntBASIC0.61□□□□□ -2.31
BDNFP23560 MIR1302-9-201ENST00000408365 138 ntBASIC0.61□□□□□ -2.31
BDNFP23560 MIR1302-10-201ENST00000408734 138 ntBASIC0.61□□□□□ -2.31
BDNFP23560 RNU6-875P-201ENST00000516488 106 ntBASIC0.61□□□□□ -2.31
BDNFP23560 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.61□□□□□ -2.31
BDNFP23560 AP003484.1-201ENST00000530974 250 ntBASIC0.61□□□□□ -2.31
BDNFP23560 AC004817.2-201ENST00000561794 651 ntBASIC0.61□□□□□ -2.31
BDNFP23560 AL512605.2-201ENST00000592972 256 ntBASIC0.61□□□□□ -2.31
BDNFP23560 MIR1302-2-201ENST00000607096 138 ntBASIC0.61□□□□□ -2.31
BDNFP23560 MIR6513-201ENST00000621188 64 ntBASIC0.61□□□□□ -2.31
BDNFP23560 RNA5SP499-201ENST00000363982 119 ntBASIC0.6□□□□□ -2.31
BDNFP23560 RNU6-801P-201ENST00000364087 105 ntBASIC0.6□□□□□ -2.31
BDNFP23560 RNU6-934P-201ENST00000365154 107 ntBASIC0.6□□□□□ -2.31
BDNFP23560 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.6□□□□□ -2.31
BDNFP23560 RNU2-13P-201ENST00000515909 113 ntBASIC0.6□□□□□ -2.31
BDNFP23560 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
BDNFP23560 MIR4662B-201ENST00000579498 81 ntBASIC0.6□□□□□ -2.31
BDNFP23560 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.6□□□□□ -2.31
BDNFP23560 SNORD114-26-201ENST00000363543 72 ntBASIC0.59□□□□□ -2.31
BDNFP23560 Y_RNA.197-201ENST00000364004 102 ntBASIC0.59□□□□□ -2.31
BDNFP23560 Y_RNA.222-201ENST00000364264 102 ntBASIC0.59□□□□□ -2.31
BDNFP23560 MIR573-201ENST00000384964 99 ntBASIC0.59□□□□□ -2.31
BDNFP23560 AL603910.2-201ENST00000407268 136 ntBASIC0.59□□□□□ -2.31
BDNFP23560 MIR1278-201ENST00000408753 81 ntBASIC0.59□□□□□ -2.31
BDNFP23560 AC098934.3-201ENST00000430450 190 ntBASIC0.59□□□□□ -2.31
BDNFP23560 MTND5P20-201ENST00000448677 143 ntBASIC0.59□□□□□ -2.31
BDNFP23560 RNU6-1170P-201ENST00000515974 106 ntBASIC0.59□□□□□ -2.31
BDNFP23560 RNU6-191P-201ENST00000516295 94 ntBASIC0.59□□□□□ -2.31
BDNFP23560 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.59□□□□□ -2.31
BDNFP23560 SNORD115-34-201ENST00000362441 82 ntBASIC0.58□□□□□ -2.32
BDNFP23560 RNA5SP347-201ENST00000362445 119 ntBASIC0.58□□□□□ -2.32
BDNFP23560 SNORD115-12-201ENST00000362583 82 ntBASIC0.58□□□□□ -2.32
BDNFP23560 Y_RNA.36-201ENST00000362602 112 ntBASIC0.58□□□□□ -2.32
BDNFP23560 RNU4-90P-201ENST00000362773 141 ntBASIC0.58□□□□□ -2.32
BDNFP23560 SNORD115-29-201ENST00000362834 82 ntBASIC0.58□□□□□ -2.32
BDNFP23560 SNORD115-9-201ENST00000362912 82 ntBASIC0.58□□□□□ -2.32
BDNFP23560 SNORD115-21-201ENST00000362963 81 ntBASIC0.58□□□□□ -2.32
BDNFP23560 SNORD115-14-201ENST00000363090 81 ntBASIC0.58□□□□□ -2.32
BDNFP23560 SNORD115-13-201ENST00000363358 82 ntBASIC0.58□□□□□ -2.32
BDNFP23560 Y_RNA.136-201ENST00000363444 102 ntBASIC0.58□□□□□ -2.32
BDNFP23560 SNORD115-41-201ENST00000363608 82 ntBASIC0.58□□□□□ -2.32
BDNFP23560 SNORD115-11-201ENST00000363616 82 ntBASIC0.58□□□□□ -2.32
BDNFP23560 SNORD115-5-201ENST00000363633 82 ntBASIC0.58□□□□□ -2.32
BDNFP23560 SNORD115-39-201ENST00000363694 82 ntBASIC0.58□□□□□ -2.32
BDNFP23560 SNORD115-4-201ENST00000363810 82 ntBASIC0.58□□□□□ -2.32
BDNFP23560 SNORD115-16-201ENST00000363887 82 ntBASIC0.58□□□□□ -2.32
BDNFP23560 SNORD115-6-201ENST00000363942 82 ntBASIC0.58□□□□□ -2.32
BDNFP23560 RNU6-1048P-201ENST00000364054 107 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 753 ms