Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 RNU6-1123P-201ENST00000362347 106 ntBASIC2.6□□□□□ -1.99
ERCC3P19447 SNORA64-201ENST00000384674 134 ntBASIC2.6□□□□□ -1.99
ERCC3P19447 MIR221-201ENST00000385135 110 ntBASIC2.6□□□□□ -1.99
ERCC3P19447 RPL23AP42-201ENST00000471152 471 ntBASIC2.6□□□□□ -1.99
ERCC3P19447 SNORA25.12-201ENST00000516202 82 ntBASIC2.6□□□□□ -1.99
ERCC3P19447 Y_RNA.703-201ENST00000516846 111 ntBASIC2.6□□□□□ -1.99
ERCC3P19447 AC097639.2-201ENST00000603159 172 ntBASIC2.6□□□□□ -1.99
ERCC3P19447 MIR8074-201ENST00000615081 81 ntBASIC2.6□□□□□ -1.99
ERCC3P19447 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
ERCC3P19447 RNU6-661P-201ENST00000362409 107 ntBASIC2.59□□□□□ -1.99
ERCC3P19447 RNU6-978P-201ENST00000364371 103 ntBASIC2.59□□□□□ -1.99
ERCC3P19447 SNORD24-201ENST00000383884 75 ntBASIC2.59□□□□□ -1.99
ERCC3P19447 Y_RNA.400-201ENST00000383963 111 ntBASIC2.59□□□□□ -1.99
ERCC3P19447 AC112693.2-201ENST00000556538 232 ntBASIC2.59□□□□□ -1.99
ERCC3P19447 MIR8063-201ENST00000621930 81 ntBASIC2.59□□□□□ -1.99
ERCC3P19447 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
ERCC3P19447 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
ERCC3P19447 RNU6-457P-201ENST00000363999 107 ntBASIC2.58□□□□□ -2
ERCC3P19447 SNORA1-201ENST00000384107 130 ntBASIC2.58□□□□□ -2
ERCC3P19447 RNU6-746P-201ENST00000384112 109 ntBASIC2.58□□□□□ -2
ERCC3P19447 SNORA67.3-201ENST00000384366 140 ntBASIC2.58□□□□□ -2
ERCC3P19447 Y_RNA.488-201ENST00000384403 102 ntBASIC2.58□□□□□ -2
ERCC3P19447 Y_RNA.547-201ENST00000384654 119 ntBASIC2.58□□□□□ -2
ERCC3P19447 MIR513A1-201ENST00000385138 129 ntBASIC2.58□□□□□ -2
ERCC3P19447 MIR136-201ENST00000385207 82 ntBASIC2.58□□□□□ -2
ERCC3P19447 SNORA75.5-201ENST00000391291 81 ntBASIC2.58□□□□□ -2
ERCC3P19447 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.58□□□□□ -2
ERCC3P19447 AC108210.2-201ENST00000503681 201 ntBASIC2.58□□□□□ -2
ERCC3P19447 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.58□□□□□ -2
ERCC3P19447 FAM106DP-201ENST00000586416 501 ntBASIC2.58□□□□□ -2
ERCC3P19447 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.57□□□□□ -2
ERCC3P19447 RNU6-888P-201ENST00000363010 101 ntBASIC2.57□□□□□ -2
ERCC3P19447 SNORD115-28-201ENST00000363931 81 ntBASIC2.57□□□□□ -2
ERCC3P19447 Y_RNA.215-201ENST00000364204 112 ntBASIC2.57□□□□□ -2
ERCC3P19447 RNU6-1082P-201ENST00000364574 107 ntBASIC2.57□□□□□ -2
ERCC3P19447 Y_RNA.343-201ENST00000365354 112 ntBASIC2.57□□□□□ -2
ERCC3P19447 RNU6-125P-201ENST00000384505 107 ntBASIC2.57□□□□□ -2
ERCC3P19447 AL445646.1-201ENST00000431784 216 ntBASIC2.57□□□□□ -2
ERCC3P19447 AC007751.1-201ENST00000529260 376 ntBASIC2.57□□□□□ -2
ERCC3P19447 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.57□□□□□ -2
ERCC3P19447 AC022254.1-201ENST00000567857 235 ntBASIC2.57□□□□□ -2
ERCC3P19447 MIR3646-201ENST00000578301 84 ntBASIC2.57□□□□□ -2
ERCC3P19447 MIR6766-201ENST00000622641 72 ntBASIC2.57□□□□□ -2
ERCC3P19447 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
ERCC3P19447 RNU6-597P-201ENST00000365620 102 ntBASIC2.56□□□□□ -2
ERCC3P19447 RNU6-187P-201ENST00000384139 106 ntBASIC2.56□□□□□ -2
ERCC3P19447 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.56□□□□□ -2
ERCC3P19447 SNRPGP14-201ENST00000435400 219 ntBASIC2.56□□□□□ -2
ERCC3P19447 AL096840.1-201ENST00000603287 93 ntBASIC2.56□□□□□ -2
ERCC3P19447 MIR518F-201ENST00000384973 87 ntBASIC2.55□□□□□ -2
ERCC3P19447 AL023284.1-201ENST00000403956 276 ntBASIC2.55□□□□□ -2
ERCC3P19447 AC090255.1-201ENST00000495779 349 ntBASIC2.55□□□□□ -2
ERCC3P19447 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.55□□□□□ -2
ERCC3P19447 MIR548X2-201ENST00000579776 100 ntBASIC2.55□□□□□ -2
ERCC3P19447 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
ERCC3P19447 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.54□□□□□ -2
ERCC3P19447 RNA5SP127-201ENST00000411051 133 ntBASIC2.54□□□□□ -2
ERCC3P19447 HMGN2P38-201ENST00000423806 265 ntBASIC2.54□□□□□ -2
ERCC3P19447 AF228730.3-201ENST00000436691 102 ntBASIC2.54□□□□□ -2
ERCC3P19447 SNORA18.7-201ENST00000516910 131 ntBASIC2.54□□□□□ -2
ERCC3P19447 AC134878.1-201ENST00000619901 243 ntBASIC2.54□□□□□ -2
ERCC3P19447 MIR219B-201ENST00000637023 88 ntBASIC2.54□□□□□ -2
ERCC3P19447 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.54□□□□□ -2
ERCC3P19447 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
ERCC3P19447 RNU4-52P-201ENST00000384209 138 ntBASIC2.53□□□□□ -2
ERCC3P19447 MIR548A2-201ENST00000384956 97 ntBASIC2.53□□□□□ -2
ERCC3P19447 RNU2-40P-201ENST00000410833 196 ntBASIC2.53□□□□□ -2
ERCC3P19447 snoU13.9-201ENST00000458927 103 ntBASIC2.53□□□□□ -2
ERCC3P19447 RNA5SP272-201ENST00000516095 111 ntBASIC2.53□□□□□ -2
ERCC3P19447 SNORA44.1-201ENST00000517031 108 ntBASIC2.53□□□□□ -2
ERCC3P19447 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.53□□□□□ -2
ERCC3P19447 AC080100.1-201ENST00000624239 5356 ntBASIC2.53□□□□□ -2.01
ERCC3P19447 ZNF720P1-201ENST00000562403 1939 ntBASIC2.52□□□□□ -2.01
ERCC3P19447 RNA5SP99-201ENST00000364020 114 ntBASIC2.52□□□□□ -2.01
ERCC3P19447 Y_RNA.542-201ENST00000384641 111 ntBASIC2.52□□□□□ -2.01
ERCC3P19447 MIR526A1-201ENST00000384897 85 ntBASIC2.52□□□□□ -2.01
ERCC3P19447 HSPE1P24-201ENST00000450782 238 ntBASIC2.52□□□□□ -2.01
ERCC3P19447 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.52□□□□□ -2.01
ERCC3P19447 RNU7-181P-201ENST00000517234 74 ntBASIC2.52□□□□□ -2.01
ERCC3P19447 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.52□□□□□ -2.01
ERCC3P19447 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
ERCC3P19447 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
ERCC3P19447 Y_RNA.37-201ENST00000362606 108 ntBASIC2.51□□□□□ -2.01
ERCC3P19447 RNA5SP37-201ENST00000365420 130 ntBASIC2.51□□□□□ -2.01
ERCC3P19447 RNY1P5-201ENST00000383890 115 ntBASIC2.51□□□□□ -2.01
ERCC3P19447 SNORA20-201ENST00000384662 132 ntBASIC2.51□□□□□ -2.01
ERCC3P19447 MIR194-1-201ENST00000384892 85 ntBASIC2.51□□□□□ -2.01
ERCC3P19447 RNU6-482P-201ENST00000391068 107 ntBASIC2.51□□□□□ -2.01
ERCC3P19447 HMGN2P23-201ENST00000456759 269 ntBASIC2.51□□□□□ -2.01
ERCC3P19447 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
ERCC3P19447 Y_RNA.241-201ENST00000364470 117 ntBASIC2.5□□□□□ -2.01
ERCC3P19447 RNU6-1189P-201ENST00000383958 107 ntBASIC2.5□□□□□ -2.01
ERCC3P19447 MIR30A-201ENST00000385092 71 ntBASIC2.5□□□□□ -2.01
ERCC3P19447 Y_RNA.584-201ENST00000391090 114 ntBASIC2.5□□□□□ -2.01
ERCC3P19447 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.5□□□□□ -2.01
ERCC3P19447 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.5□□□□□ -2.01
ERCC3P19447 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
ERCC3P19447 AC005908.1-201ENST00000468701 347 ntBASIC2.5□□□□□ -2.01
ERCC3P19447 RNU6-322P-201ENST00000516010 103 ntBASIC2.5□□□□□ -2.01
ERCC3P19447 RNA5SP200-201ENST00000516360 103 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms