Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RNU4-57P-201ENST00000515980 135 ntBASIC1.11□□□□□ -2.23
HMGB1P09429 AL049861.1-201ENST00000603130 150 ntBASIC1.11□□□□□ -2.23
HMGB1P09429 AC037487.3-201ENST00000606668 112 ntBASIC1.11□□□□□ -2.23
HMGB1P09429 AC243994.1-201ENST00000618627 109 ntBASIC1.11□□□□□ -2.23
HMGB1P09429 MIR1-1-201ENST00000362147 71 ntBASIC1.1□□□□□ -2.23
HMGB1P09429 MIR367-201ENST00000362299 68 ntBASIC1.1□□□□□ -2.23
HMGB1P09429 Y_RNA.293-201ENST00000364908 93 ntBASIC1.1□□□□□ -2.23
HMGB1P09429 MIR532-201ENST00000385025 91 ntBASIC1.1□□□□□ -2.23
HMGB1P09429 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.1□□□□□ -2.23
HMGB1P09429 RNU7-25P-201ENST00000516544 62 ntBASIC1.1□□□□□ -2.23
HMGB1P09429 RNU7-149P-201ENST00000516739 59 ntBASIC1.1□□□□□ -2.23
HMGB1P09429 AC013791.1-201ENST00000616619 62 ntBASIC1.1□□□□□ -2.23
HMGB1P09429 SNORA25.1-201ENST00000362326 128 ntBASIC1.09□□□□□ -2.23
HMGB1P09429 RNU6-474P-201ENST00000384243 107 ntBASIC1.09□□□□□ -2.23
HMGB1P09429 RNU6-110P-201ENST00000384508 104 ntBASIC1.09□□□□□ -2.23
HMGB1P09429 MIR548O-201ENST00000408583 114 ntBASIC1.09□□□□□ -2.23
HMGB1P09429 RNU6-321P-201ENST00000410912 106 ntBASIC1.09□□□□□ -2.23
HMGB1P09429 Y_RNA.631-201ENST00000459607 101 ntBASIC1.09□□□□□ -2.23
HMGB1P09429 AC107297.1-201ENST00000459991 176 ntBASIC1.09□□□□□ -2.23
HMGB1P09429 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.09□□□□□ -2.23
HMGB1P09429 RNY3P15-201ENST00000516297 97 ntBASIC1.09□□□□□ -2.23
HMGB1P09429 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.09□□□□□ -2.23
HMGB1P09429 AL160413.1-201ENST00000622780 310 ntBASIC1.09□□□□□ -2.23
HMGB1P09429 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
HMGB1P09429 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.24
HMGB1P09429 Y_RNA.105-201ENST00000363182 111 ntBASIC1.08□□□□□ -2.24
HMGB1P09429 RNU6-290P-201ENST00000365212 101 ntBASIC1.08□□□□□ -2.24
HMGB1P09429 Y_RNA.509-201ENST00000384506 99 ntBASIC1.08□□□□□ -2.24
HMGB1P09429 Y_RNA.581-201ENST00000391017 97 ntBASIC1.08□□□□□ -2.24
HMGB1P09429 SNORA53-201ENST00000391141 249 ntBASIC1.08□□□□□ -2.24
HMGB1P09429 Y_RNA.637-201ENST00000459424 114 ntBASIC1.08□□□□□ -2.24
HMGB1P09429 AC011195.1-201ENST00000578177 177 ntBASIC1.08□□□□□ -2.24
HMGB1P09429 AP001094.1-201ENST00000579805 193 ntBASIC1.08□□□□□ -2.24
HMGB1P09429 uc_338.4-201ENST00000616635 176 ntBASIC1.08□□□□□ -2.24
HMGB1P09429 AC022140.2-201ENST00000623500 188 ntBASIC1.08□□□□□ -2.24
HMGB1P09429 Y_RNA.394-201ENST00000383942 103 ntBASIC1.07□□□□□ -2.24
HMGB1P09429 Y_RNA.547-201ENST00000384654 119 ntBASIC1.07□□□□□ -2.24
HMGB1P09429 BTF3P11-201ENST00000426582 477 ntBASIC1.07□□□□□ -2.24
HMGB1P09429 RNU2-31P-201ENST00000516954 155 ntBASIC1.07□□□□□ -2.24
HMGB1P09429 MIR4724-201ENST00000579485 89 ntBASIC1.07□□□□□ -2.24
HMGB1P09429 AP000753.3-201ENST00000604083 169 ntBASIC1.07□□□□□ -2.24
HMGB1P09429 MIR6857-201ENST00000613267 93 ntBASIC1.07□□□□□ -2.24
HMGB1P09429 RNU6-121P-201ENST00000410525 99 ntBASIC1.06□□□□□ -2.24
HMGB1P09429 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.06□□□□□ -2.24
HMGB1P09429 AC098869.1-201ENST00000481627 292 ntBASIC1.06□□□□□ -2.24
HMGB1P09429 COX6CP6-201ENST00000490840 228 ntBASIC1.06□□□□□ -2.24
HMGB1P09429 MIR5692C2-201ENST00000577959 77 ntBASIC1.06□□□□□ -2.24
HMGB1P09429 RNY1P10-201ENST00000363268 113 ntBASIC1.05□□□□□ -2.24
HMGB1P09429 Y_RNA.168-201ENST00000363740 102 ntBASIC1.05□□□□□ -2.24
HMGB1P09429 Y_RNA.460-201ENST00000384255 102 ntBASIC1.05□□□□□ -2.24
HMGB1P09429 RNU6-205P-201ENST00000390858 107 ntBASIC1.05□□□□□ -2.24
HMGB1P09429 MIR1827-201ENST00000408549 66 ntBASIC1.05□□□□□ -2.24
HMGB1P09429 MTND4LP30-201ENST00000454092 297 ntBASIC1.05□□□□□ -2.24
HMGB1P09429 Y_RNA.241-201ENST00000364470 117 ntBASIC1.04□□□□□ -2.24
HMGB1P09429 Y_RNA.338-201ENST00000365320 114 ntBASIC1.04□□□□□ -2.24
HMGB1P09429 Y_RNA.380-201ENST00000365663 111 ntBASIC1.04□□□□□ -2.24
HMGB1P09429 RNU6-662P-201ENST00000384253 104 ntBASIC1.04□□□□□ -2.24
HMGB1P09429 SNORD105-201ENST00000386910 85 ntBASIC1.04□□□□□ -2.24
HMGB1P09429 RNA5SP496-201ENST00000391240 109 ntBASIC1.04□□□□□ -2.24
HMGB1P09429 RNU7-67P-201ENST00000459003 62 ntBASIC1.04□□□□□ -2.24
HMGB1P09429 RNU6-1053P-201ENST00000515930 101 ntBASIC1.04□□□□□ -2.24
HMGB1P09429 Y_RNA.666-201ENST00000516187 112 ntBASIC1.04□□□□□ -2.24
HMGB1P09429 MTND4P29-201ENST00000503122 1372 ntBASIC1.04□□□□□ -2.24
HMGB1P09429 RNU6-1272P-201ENST00000362776 107 ntBASIC1.03□□□□□ -2.24
HMGB1P09429 Y_RNA.376-201ENST00000365638 108 ntBASIC1.03□□□□□ -2.24
HMGB1P09429 RNU1-119P-201ENST00000391122 165 ntBASIC1.03□□□□□ -2.24
HMGB1P09429 RNA5SP222-201ENST00000411039 105 ntBASIC1.03□□□□□ -2.24
HMGB1P09429 Y_RNA.19-201ENST00000362462 99 ntBASIC1.02□□□□□ -2.25
HMGB1P09429 RNU6-770P-201ENST00000363929 105 ntBASIC1.02□□□□□ -2.25
HMGB1P09429 Y_RNA.541-201ENST00000384640 113 ntBASIC1.02□□□□□ -2.25
HMGB1P09429 MIR215-201ENST00000384858 110 ntBASIC1.02□□□□□ -2.25
HMGB1P09429 MIR146A-201ENST00000385201 99 ntBASIC1.02□□□□□ -2.25
HMGB1P09429 AC091959.1-201ENST00000495857 238 ntBASIC1.02□□□□□ -2.25
HMGB1P09429 AC131281.1-201ENST00000522984 164 ntBASIC1.02□□□□□ -2.25
HMGB1P09429 Y_RNA.128-201ENST00000363391 112 ntBASIC1.01□□□□□ -2.25
HMGB1P09429 Y_RNA.210-201ENST00000364161 110 ntBASIC1.01□□□□□ -2.25
HMGB1P09429 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
HMGB1P09429 SNORA22B-201ENST00000383876 138 ntBASIC1.01□□□□□ -2.25
HMGB1P09429 ELOCP20-201ENST00000422460 345 ntBASIC1.01□□□□□ -2.25
HMGB1P09429 FAM71BP1-201ENST00000604431 523 ntBASIC1.01□□□□□ -2.25
HMGB1P09429 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.01□□□□□ -2.25
HMGB1P09429 RNA5SP432-201ENST00000362480 116 ntBASIC1□□□□□ -2.25
HMGB1P09429 Y_RNA.527-201ENST00000384573 102 ntBASIC1□□□□□ -2.25
HMGB1P09429 RNU2-13P-201ENST00000515909 113 ntBASIC1□□□□□ -2.25
HMGB1P09429 RNU6-351P-201ENST00000516097 100 ntBASIC1□□□□□ -2.25
HMGB1P09429 RNU6-113P-201ENST00000516653 101 ntBASIC1□□□□□ -2.25
HMGB1P09429 HSBP1P2-201ENST00000299671 229 ntBASIC0.99□□□□□ -2.25
HMGB1P09429 snoU2_19.2-201ENST00000363024 80 ntBASIC0.99□□□□□ -2.25
HMGB1P09429 SNORD114-2-201ENST00000363953 78 ntBASIC0.99□□□□□ -2.25
HMGB1P09429 RNU6-326P-201ENST00000365480 107 ntBASIC0.99□□□□□ -2.25
HMGB1P09429 SNORA36.2-201ENST00000384004 127 ntBASIC0.99□□□□□ -2.25
HMGB1P09429 RPL21P38-201ENST00000418090 167 ntBASIC0.99□□□□□ -2.25
HMGB1P09429 AC244098.3-201ENST00000424803 96 ntBASIC0.99□□□□□ -2.25
HMGB1P09429 RNU6-958P-201ENST00000516995 106 ntBASIC0.99□□□□□ -2.25
HMGB1P09429 AL021707.8-201ENST00000609428 183 ntBASIC0.99□□□□□ -2.25
HMGB1P09429 AC134878.1-201ENST00000619901 243 ntBASIC0.99□□□□□ -2.25
HMGB1P09429 Y_RNA.214-201ENST00000364201 112 ntBASIC0.98□□□□□ -2.25
HMGB1P09429 Y_RNA.455-201ENST00000384230 98 ntBASIC0.98□□□□□ -2.25
HMGB1P09429 RNU6-125P-201ENST00000384505 107 ntBASIC0.98□□□□□ -2.25
HMGB1P09429 Y_RNA.587-201ENST00000391210 103 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 171.5 ms