Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
HLA-DQA1P01909 Y_RNA.112-201ENST00000363250 102 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 Y_RNA.168-201ENST00000363740 102 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 SNORD45.3-201ENST00000363836 72 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
HLA-DQA1P01909 Y_RNA.494-201ENST00000384432 111 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 RNU6-763P-201ENST00000390865 106 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 RNU6-308P-201ENST00000390957 107 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 Y_RNA.602-201ENST00000410535 92 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 RNU6-383P-201ENST00000410864 94 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 RNA5SP222-201ENST00000411039 105 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC0.41□□□□□ -2.34
HLA-DQA1P01909 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.41□□□□□ -2.34
HLA-DQA1P01909 MRPS35P2-201ENST00000508242 191 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 MTND3P22-201ENST00000510932 243 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 RNU6-397P-201ENST00000516226 104 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 RNU4-54P-201ENST00000516428 129 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 Y_RNA.702-201ENST00000516843 96 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 AP003484.1-201ENST00000530974 250 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 MIR6788-201ENST00000618842 66 ntBASIC0.41□□□□□ -2.34
HLA-DQA1P01909 Y_RNA.31-201ENST00000362574 102 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 RNU6-125P-201ENST00000384505 107 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 Y_RNA.547-201ENST00000384654 119 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.4□□□□□ -2.35
HLA-DQA1P01909 RNU6-205P-201ENST00000390858 107 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 RNU6-1248P-201ENST00000391096 64 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 Y_RNA.645-201ENST00000391229 102 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 MIR548J-201ENST00000408833 112 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 AC090844.1-201ENST00000422019 156 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 AC015818.7-201ENST00000428754 109 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 AC087499.7-201ENST00000441958 109 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 AL157398.1-201ENST00000452981 186 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 HSPE1P25-201ENST00000455484 251 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 RNU7-25P-201ENST00000516544 62 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
HLA-DQA1P01909 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.4□□□□□ -2.35
HLA-DQA1P01909 AL133255.1-201ENST00000606374 441 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 AC243994.1-201ENST00000618627 109 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 MIR6734-201ENST00000621166 68 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 AC022140.2-201ENST00000623500 188 ntBASIC0.4□□□□□ -2.35
HLA-DQA1P01909 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.4□□□□□ -2.35
HLA-DQA1P01909 MIR369-201ENST00000362155 70 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 RNU6-899P-201ENST00000363947 107 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 RNU6-580P-201ENST00000365159 107 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 SNORA1.2-201ENST00000365189 134 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 RNY1P8-201ENST00000383970 114 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 Y_RNA.419-201ENST00000384041 102 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 Y_RNA.424-201ENST00000384063 103 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.39□□□□□ -2.35
HLA-DQA1P01909 RNU6-847P-201ENST00000411115 108 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.39□□□□□ -2.35
HLA-DQA1P01909 MTND4P19-201ENST00000446659 478 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 Y_RNA.637-201ENST00000459424 114 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 RNU6-475P-201ENST00000516073 104 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 RNU6-496P-201ENST00000516145 99 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 RNU6-1007P-201ENST00000516586 107 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 RNU6-897P-201ENST00000517135 105 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 AC124312.5-201ENST00000604451 268 ntBASIC0.39□□□□□ -2.35
HLA-DQA1P01909 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.39□□□□□ -2.35
HLA-DQA1P01909 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.38□□□□□ -2.35
HLA-DQA1P01909 Y_RNA.136-201ENST00000363444 102 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 RNU6-1205P-201ENST00000363625 106 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 SNORD18A-201ENST00000363753 72 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 RNU6-450P-201ENST00000364654 107 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 Y_RNA.395-201ENST00000383945 109 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 RNU6-945P-201ENST00000383947 107 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 SNORA36.2-201ENST00000384004 127 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 SNORD115-46-201ENST00000390982 71 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 SNORD83.1-201ENST00000411362 77 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 AC244023.1-201ENST00000426884 112 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 MTCO1P5-201ENST00000433573 344 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.38□□□□□ -2.35
HLA-DQA1P01909 RNU6-1170P-201ENST00000515974 106 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 Y_RNA.666-201ENST00000516187 112 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 RNU7-149P-201ENST00000516739 59 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 AC242498.1-201ENST00000604134 111 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 Y_RNA.804-201ENST00000615262 101 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 MIR376A1-201ENST00000616574 68 ntBASIC0.38□□□□□ -2.35
HLA-DQA1P01909 Y_RNA.105-201ENST00000363182 111 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 Y_RNA.183-201ENST00000363882 113 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 RNU6-934P-201ENST00000365154 107 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 Y_RNA.445-201ENST00000384168 102 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 Y_RNA.569-201ENST00000384749 103 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.37□□□□□ -2.35
HLA-DQA1P01909 RNA5SP121-201ENST00000516537 101 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 RNU6-229P-201ENST00000516614 102 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 AC007751.1-201ENST00000529260 376 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 MIR4801-201ENST00000582704 82 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 AL049861.1-201ENST00000603130 150 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 C8orf59P2-201ENST00000603441 271 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 RAC1P9-201ENST00000604990 392 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 LARP7P1-201ENST00000605576 316 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 uc_338.4-201ENST00000616635 176 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 RMST_2.1-201ENST00000617263 136 ntBASIC0.37□□□□□ -2.35
HLA-DQA1P01909 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.37□□□□□ -2.35
HLA-DQA1P01909 RNA5SP347-201ENST00000362445 119 ntBASIC0.36□□□□□ -2.35
HLA-DQA1P01909 SNORD42.2-201ENST00000365570 69 ntBASIC0.36□□□□□ -2.35
HLA-DQA1P01909 RNU6-144P-201ENST00000383951 107 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms