Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 MIR520F-201ENST00000384824 87 ntBASIC0.25□□□□□ -2.37
CPSF4O95639 AC090844.1-201ENST00000422019 156 ntBASIC0.25□□□□□ -2.37
CPSF4O95639 MTCO2P12-201ENST00000427426 682 ntBASIC0.25□□□□□ -2.37
CPSF4O95639 POLR2KP2-201ENST00000438155 177 ntBASIC0.25□□□□□ -2.37
CPSF4O95639 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.25□□□□□ -2.37
CPSF4O95639 U8.20-201ENST00000459445 131 ntBASIC0.25□□□□□ -2.37
CPSF4O95639 RNU6-496P-201ENST00000516145 99 ntBASIC0.25□□□□□ -2.37
CPSF4O95639 Y_RNA.676-201ENST00000516393 96 ntBASIC0.25□□□□□ -2.37
CPSF4O95639 RNU6-977P-201ENST00000516411 103 ntBASIC0.25□□□□□ -2.37
CPSF4O95639 SNORA40.14-201ENST00000516543 86 ntBASIC0.25□□□□□ -2.37
CPSF4O95639 RNU6-1007P-201ENST00000516586 107 ntBASIC0.25□□□□□ -2.37
CPSF4O95639 RNU6-1223P-201ENST00000517124 104 ntBASIC0.25□□□□□ -2.37
CPSF4O95639 UBE2V2P2-201ENST00000587677 504 ntBASIC0.25□□□□□ -2.37
CPSF4O95639 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.25□□□□□ -2.37
CPSF4O95639 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.25□□□□□ -2.37
CPSF4O95639 uc_338.4-201ENST00000616635 176 ntBASIC0.25□□□□□ -2.37
CPSF4O95639 Y_RNA.5-201ENST00000362334 102 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 Y_RNA.252-201ENST00000364556 101 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 RNU1-133P-201ENST00000364867 167 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 RNU1-115P-201ENST00000365329 160 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 RNY3-201ENST00000365484 102 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 Y_RNA.547-201ENST00000384654 119 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 RNU6-130P-201ENST00000411112 103 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.24□□□□□ -2.37
CPSF4O95639 SNORD19B-201ENST00000459623 84 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 SNORA68.3-201ENST00000515906 83 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 RNA5SP220-201ENST00000516298 104 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 RNU7-25P-201ENST00000516544 62 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 MIR4771-2-201ENST00000577758 74 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.24□□□□□ -2.37
CPSF4O95639 MIR4771-1-201ENST00000582617 74 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 LARP7P1-201ENST00000605576 316 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 PART1_1.1-201ENST00000611761 217 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 AL138825.1-201ENST00000618587 192 ntBASIC0.24□□□□□ -2.37
CPSF4O95639 AC090625.1-201ENST00000357130 210 ntBASIC0.23□□□□□ -2.37
CPSF4O95639 MIR18A-201ENST00000362310 71 ntBASIC0.23□□□□□ -2.37
CPSF4O95639 Y_RNA.242-201ENST00000364473 110 ntBASIC0.23□□□□□ -2.37
CPSF4O95639 Y_RNA.471-201ENST00000384312 102 ntBASIC0.23□□□□□ -2.37
CPSF4O95639 Y_RNA.494-201ENST00000384432 111 ntBASIC0.23□□□□□ -2.37
CPSF4O95639 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.23□□□□□ -2.37
CPSF4O95639 AC002350.1-201ENST00000490759 375 ntBASIC0.23□□□□□ -2.37
CPSF4O95639 SEPT14P8-201ENST00000508026 178 ntBASIC0.23□□□□□ -2.37
CPSF4O95639 RNA5SP436-201ENST00000516020 115 ntBASIC0.23□□□□□ -2.37
CPSF4O95639 RNU6-191P-201ENST00000516295 94 ntBASIC0.23□□□□□ -2.37
CPSF4O95639 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.23□□□□□ -2.37
CPSF4O95639 MIR3612-201ENST00000579753 87 ntBASIC0.23□□□□□ -2.37
CPSF4O95639 MIR4804-201ENST00000581683 73 ntBASIC0.23□□□□□ -2.37
CPSF4O95639 MIR4264-201ENST00000583520 66 ntBASIC0.23□□□□□ -2.37
CPSF4O95639 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.22□□□□□ -2.37
CPSF4O95639 MIRLET7D-201ENST00000362263 87 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 RNU6-1283P-201ENST00000365314 105 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 RNU6-308P-201ENST00000390957 107 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 RNU6-1248P-201ENST00000391096 64 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 MIR936-201ENST00000401264 98 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 RNU6-1132P-201ENST00000459214 107 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 snoU13.16-201ENST00000459350 104 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 AC107297.1-201ENST00000459991 176 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 Y_RNA.713-201ENST00000517013 96 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 MIR4676-201ENST00000583078 72 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 AL162730.1-201ENST00000605734 292 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 AC020891.4-201ENST00000605745 93 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 SNORD113-5-201ENST00000607261 78 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 MIR6734-201ENST00000621166 68 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 AC022140.2-201ENST00000623500 188 ntBASIC0.22□□□□□ -2.37
CPSF4O95639 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.22□□□□□ -2.37
CPSF4O95639 Y_RNA.70-201ENST00000362886 110 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 SNORA72.1-201ENST00000363485 129 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 RNU6-899P-201ENST00000363947 107 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 VTRNA1-3-201ENST00000365645 89 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 Y_RNA.418-201ENST00000384029 102 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 SNORA24-201ENST00000384096 131 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 RNY1P14-201ENST00000384426 108 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 Y_RNA.526-201ENST00000384572 110 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 MIR548O-201ENST00000408583 114 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 BTF3P11-201ENST00000426582 477 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.21□□□□□ -2.38
CPSF4O95639 RNU7-56P-201ENST00000458744 62 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 RNU7-62P-201ENST00000458856 62 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 RNU7-67P-201ENST00000459003 62 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 AC091959.1-201ENST00000495857 238 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 FGF7P4-201ENST00000509595 295 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 RNU6-1170P-201ENST00000515974 106 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 RNU6-976P-201ENST00000516086 111 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 RNU6-1046P-201ENST00000516538 107 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 RNU7-149P-201ENST00000516739 59 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 AC040926.1-201ENST00000530195 238 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 MIR4711-201ENST00000578274 70 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 uc_338.6-201ENST00000613544 171 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 AC134878.1-201ENST00000619901 243 ntBASIC0.21□□□□□ -2.38
CPSF4O95639 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.21□□□□□ -2.38
CPSF4O95639 RNU6-1205P-201ENST00000363625 106 ntBASIC0.2□□□□□ -2.38
CPSF4O95639 Y_RNA.222-201ENST00000364264 102 ntBASIC0.2□□□□□ -2.38
CPSF4O95639 Y_RNA.241-201ENST00000364470 117 ntBASIC0.2□□□□□ -2.38
CPSF4O95639 RNU6-342P-201ENST00000384521 104 ntBASIC0.2□□□□□ -2.38
CPSF4O95639 Y_RNA.529-201ENST00000384586 119 ntBASIC0.2□□□□□ -2.38
CPSF4O95639 RNU6-763P-201ENST00000390865 106 ntBASIC0.2□□□□□ -2.38
CPSF4O95639 RNA5SP193-201ENST00000410353 107 ntBASIC0.2□□□□□ -2.38
CPSF4O95639 RNU6-383P-201ENST00000410864 94 ntBASIC0.2□□□□□ -2.38
CPSF4O95639 AC236972.2-201ENST00000434979 310 ntBASIC0.2□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms