Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 RNU6-268P-201ENST00000364174 107 ntBASIC1.22□□□□□ -2.21
RTN3O95197 Y_RNA.217-201ENST00000364214 105 ntBASIC1.22□□□□□ -2.21
RTN3O95197 Y_RNA.354-201ENST00000365448 111 ntBASIC1.22□□□□□ -2.21
RTN3O95197 AL591704.2-201ENST00000421658 181 ntBASIC1.22□□□□□ -2.21
RTN3O95197 MTND5P22-201ENST00000458380 195 ntBASIC1.22□□□□□ -2.21
RTN3O95197 Y_RNA.641-201ENST00000459414 105 ntBASIC1.22□□□□□ -2.21
RTN3O95197 RNU6-1338P-201ENST00000516328 91 ntBASIC1.22□□□□□ -2.21
RTN3O95197 RNU6-830P-201ENST00000516353 107 ntBASIC1.22□□□□□ -2.21
RTN3O95197 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.22□□□□□ -2.21
RTN3O95197 RNU1-93P-201ENST00000364704 169 ntBASIC1.21□□□□□ -2.22
RTN3O95197 RNU6-713P-201ENST00000384761 107 ntBASIC1.21□□□□□ -2.22
RTN3O95197 MIR520E-201ENST00000384867 87 ntBASIC1.21□□□□□ -2.22
RTN3O95197 SNORD72-201ENST00000390994 80 ntBASIC1.21□□□□□ -2.22
RTN3O95197 RNU6-1109P-201ENST00000391187 107 ntBASIC1.21□□□□□ -2.22
RTN3O95197 RNA5SP496-201ENST00000391240 109 ntBASIC1.21□□□□□ -2.22
RTN3O95197 RNU6-1203P-201ENST00000410703 110 ntBASIC1.21□□□□□ -2.22
RTN3O95197 snoU13.25-201ENST00000458945 104 ntBASIC1.21□□□□□ -2.22
RTN3O95197 RPS29P1-201ENST00000465274 159 ntBASIC1.21□□□□□ -2.22
RTN3O95197 RNU7-41P-201ENST00000515917 61 ntBASIC1.21□□□□□ -2.22
RTN3O95197 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.21□□□□□ -2.22
RTN3O95197 AC090821.2-201ENST00000523552 176 ntBASIC1.21□□□□□ -2.22
RTN3O95197 MIR4724-201ENST00000579485 89 ntBASIC1.21□□□□□ -2.22
RTN3O95197 AC006504.6-201ENST00000590142 199 ntBASIC1.21□□□□□ -2.22
RTN3O95197 Pinc.1-201ENST00000616452 154 ntBASIC1.21□□□□□ -2.22
RTN3O95197 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
RTN3O95197 Y_RNA.293-201ENST00000364908 93 ntBASIC1.2□□□□□ -2.22
RTN3O95197 MIR1285-1-201ENST00000408593 84 ntBASIC1.2□□□□□ -2.22
RTN3O95197 RNU6-383P-201ENST00000410864 94 ntBASIC1.2□□□□□ -2.22
RTN3O95197 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.2□□□□□ -2.22
RTN3O95197 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.2□□□□□ -2.22
RTN3O95197 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.2□□□□□ -2.22
RTN3O95197 AL442663.2-201ENST00000554385 511 ntBASIC1.2□□□□□ -2.22
RTN3O95197 AC006441.5-201ENST00000612680 209 ntBASIC1.2□□□□□ -2.22
RTN3O95197 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.2□□□□□ -2.22
RTN3O95197 Y_RNA.36-201ENST00000362602 112 ntBASIC1.19□□□□□ -2.22
RTN3O95197 RNA5SP264-201ENST00000363115 107 ntBASIC1.19□□□□□ -2.22
RTN3O95197 SNORA63-201ENST00000363450 132 ntBASIC1.19□□□□□ -2.22
RTN3O95197 SNORD114-27-201ENST00000363766 70 ntBASIC1.19□□□□□ -2.22
RTN3O95197 SNORA22-201ENST00000383907 134 ntBASIC1.19□□□□□ -2.22
RTN3O95197 RNU6-342P-201ENST00000384521 104 ntBASIC1.19□□□□□ -2.22
RTN3O95197 SNORA22C-201ENST00000384614 134 ntBASIC1.19□□□□□ -2.22
RTN3O95197 AL603910.2-201ENST00000407268 136 ntBASIC1.19□□□□□ -2.22
RTN3O95197 AC002429.1-201ENST00000437672 148 ntBASIC1.19□□□□□ -2.22
RTN3O95197 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.19□□□□□ -2.22
RTN3O95197 RNU7-21P-201ENST00000459430 62 ntBASIC1.19□□□□□ -2.22
RTN3O95197 RNU6-570P-201ENST00000517051 105 ntBASIC1.19□□□□□ -2.22
RTN3O95197 MIR4295-201ENST00000585286 85 ntBASIC1.19□□□□□ -2.22
RTN3O95197 AL021707.8-201ENST00000609428 183 ntBASIC1.19□□□□□ -2.22
RTN3O95197 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.19□□□□□ -2.22
RTN3O95197 AC022140.2-201ENST00000623500 188 ntBASIC1.19□□□□□ -2.22
RTN3O95197 snoU18.1-201ENST00000629629 71 ntBASIC1.19□□□□□ -2.22
RTN3O95197 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.18□□□□□ -2.22
RTN3O95197 Y_RNA.326-201ENST00000365176 113 ntBASIC1.18□□□□□ -2.22
RTN3O95197 SNORA75.2-201ENST00000391138 150 ntBASIC1.18□□□□□ -2.22
RTN3O95197 SNORA75.3-201ENST00000391231 150 ntBASIC1.18□□□□□ -2.22
RTN3O95197 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.18□□□□□ -2.22
RTN3O95197 RNU7-90P-201ENST00000459216 62 ntBASIC1.18□□□□□ -2.22
RTN3O95197 COX6CP14-201ENST00000469580 174 ntBASIC1.18□□□□□ -2.22
RTN3O95197 TRBVB-201ENST00000477100 408 ntBASIC1.18□□□□□ -2.22
RTN3O95197 AC087343.1-201ENST00000477341 475 ntBASIC1.18□□□□□ -2.22
RTN3O95197 RPS26P48-201ENST00000491713 339 ntBASIC1.18□□□□□ -2.22
RTN3O95197 RN7SKP164-201ENST00000516138 266 ntBASIC1.18□□□□□ -2.22
RTN3O95197 SCARNA24.2-201ENST00000516968 130 ntBASIC1.18□□□□□ -2.22
RTN3O95197 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
RTN3O95197 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.18□□□□□ -2.22
RTN3O95197 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.18□□□□□ -2.22
RTN3O95197 AL008718.3-201ENST00000610217 321 ntBASIC1.18□□□□□ -2.22
RTN3O95197 uc_338.4-201ENST00000616635 176 ntBASIC1.18□□□□□ -2.22
RTN3O95197 AC008133.2-201ENST00000624540 351 ntBASIC1.18□□□□□ -2.22
RTN3O95197 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.17□□□□□ -2.22
RTN3O95197 MIR103A2-201ENST00000362154 78 ntBASIC1.17□□□□□ -2.22
RTN3O95197 RNU6-1160P-201ENST00000384546 104 ntBASIC1.17□□□□□ -2.22
RTN3O95197 MIR598-201ENST00000384868 97 ntBASIC1.17□□□□□ -2.22
RTN3O95197 MIR526A2-201ENST00000390198 65 ntBASIC1.17□□□□□ -2.22
RTN3O95197 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.17□□□□□ -2.22
RTN3O95197 RNU6-1223P-201ENST00000517124 104 ntBASIC1.17□□□□□ -2.22
RTN3O95197 Y_RNA.720-201ENST00000517166 92 ntBASIC1.17□□□□□ -2.22
RTN3O95197 DEFB108E-201ENST00000524692 240 ntBASIC1.17□□□□□ -2.22
RTN3O95197 MIR5688-201ENST00000580619 83 ntBASIC1.17□□□□□ -2.22
RTN3O95197 MIR548AR-201ENST00000582191 57 ntBASIC1.17□□□□□ -2.22
RTN3O95197 AC015726.2-201ENST00000620112 122 ntBASIC1.17□□□□□ -2.22
RTN3O95197 AC008163.1-202ENST00000636004 2889 ntBASIC1.17□□□□□ -2.22
RTN3O95197 Y_RNA.275-201ENST00000364726 110 ntBASIC1.16□□□□□ -2.22
RTN3O95197 RNU6-1067P-201ENST00000384752 107 ntBASIC1.16□□□□□ -2.22
RTN3O95197 U8.17-201ENST00000391292 132 ntBASIC1.16□□□□□ -2.22
RTN3O95197 RPS29P28-201ENST00000446439 141 ntBASIC1.16□□□□□ -2.22
RTN3O95197 RNU6-635P-201ENST00000516651 102 ntBASIC1.16□□□□□ -2.22
RTN3O95197 RNU7-149P-201ENST00000516739 59 ntBASIC1.16□□□□□ -2.22
RTN3O95197 AP003716.2-201ENST00000528260 108 ntBASIC1.16□□□□□ -2.22
RTN3O95197 Y_RNA.802-201ENST00000614892 130 ntBASIC1.16□□□□□ -2.22
RTN3O95197 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.22
RTN3O95197 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.15□□□□□ -2.22
RTN3O95197 SNORA1.2-201ENST00000365189 134 ntBASIC1.15□□□□□ -2.23
RTN3O95197 RNU6-1138P-201ENST00000365359 106 ntBASIC1.15□□□□□ -2.23
RTN3O95197 SNORD28B-201ENST00000390993 75 ntBASIC1.15□□□□□ -2.23
RTN3O95197 OR2A41P-201ENST00000473586 105 ntBASIC1.15□□□□□ -2.23
RTN3O95197 MIR151B-201ENST00000584249 96 ntBASIC1.15□□□□□ -2.23
RTN3O95197 AL049861.1-201ENST00000603130 150 ntBASIC1.15□□□□□ -2.23
RTN3O95197 Y_RNA.812-201ENST00000610788 101 ntBASIC1.15□□□□□ -2.23
RTN3O95197 Y_RNA.784-201ENST00000613803 101 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 167.1 ms