Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 MIR9-3-201ENST00000385084 90 ntBASIC1.71□□□□□ -2.14
LDB3O75112 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
LDB3O75112 MIR676-201ENST00000390702 67 ntBASIC1.71□□□□□ -2.14
LDB3O75112 RNA5SP109-201ENST00000391010 116 ntBASIC1.71□□□□□ -2.14
LDB3O75112 SNORA75.5-201ENST00000391291 81 ntBASIC1.71□□□□□ -2.14
LDB3O75112 RNA5SP489-201ENST00000410986 109 ntBASIC1.71□□□□□ -2.14
LDB3O75112 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.71□□□□□ -2.14
LDB3O75112 HMGN2P19-201ENST00000425149 265 ntBASIC1.71□□□□□ -2.14
LDB3O75112 AC245047.4-201ENST00000433189 144 ntBASIC1.71□□□□□ -2.14
LDB3O75112 RPL23AP42-201ENST00000471152 471 ntBASIC1.71□□□□□ -2.14
LDB3O75112 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.71□□□□□ -2.14
LDB3O75112 HMGN1P7-201ENST00000491722 313 ntBASIC1.71□□□□□ -2.14
LDB3O75112 RNU6-1333P-201ENST00000516162 93 ntBASIC1.71□□□□□ -2.14
LDB3O75112 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
LDB3O75112 MIR3646-201ENST00000578301 84 ntBASIC1.71□□□□□ -2.14
LDB3O75112 MIR548AI-201ENST00000579940 88 ntBASIC1.71□□□□□ -2.14
LDB3O75112 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.71□□□□□ -2.14
LDB3O75112 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
LDB3O75112 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
LDB3O75112 MTND5P32-201ENST00000560711 1802 ntBASIC1.7□□□□□ -2.14
LDB3O75112 SNORA1-201ENST00000384107 130 ntBASIC1.7□□□□□ -2.14
LDB3O75112 RNU6-1081P-201ENST00000384537 107 ntBASIC1.7□□□□□ -2.14
LDB3O75112 MIR520A-201ENST00000384862 85 ntBASIC1.7□□□□□ -2.14
LDB3O75112 MIR548A2-201ENST00000384956 97 ntBASIC1.7□□□□□ -2.14
LDB3O75112 RNU2-70P-201ENST00000410718 179 ntBASIC1.7□□□□□ -2.14
LDB3O75112 RNA5SP100-201ENST00000410903 110 ntBASIC1.7□□□□□ -2.14
LDB3O75112 RNA5SP59-201ENST00000410922 110 ntBASIC1.7□□□□□ -2.14
LDB3O75112 RNU2-55P-201ENST00000411146 174 ntBASIC1.7□□□□□ -2.14
LDB3O75112 RNU6-313P-201ENST00000516317 112 ntBASIC1.7□□□□□ -2.14
LDB3O75112 RNU6-341P-201ENST00000516973 96 ntBASIC1.7□□□□□ -2.14
LDB3O75112 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.7□□□□□ -2.14
LDB3O75112 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.7□□□□□ -2.14
LDB3O75112 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.7□□□□□ -2.14
LDB3O75112 AC104984.5-201ENST00000586878 94 ntBASIC1.7□□□□□ -2.14
LDB3O75112 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.7□□□□□ -2.14
LDB3O75112 MIR6845-201ENST00000613182 61 ntBASIC1.7□□□□□ -2.14
LDB3O75112 JPX_2.1-201ENST00000614161 69 ntBASIC1.7□□□□□ -2.14
LDB3O75112 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.7□□□□□ -2.14
LDB3O75112 Y_RNA.127-201ENST00000363386 109 ntBASIC1.69□□□□□ -2.14
LDB3O75112 RNU6-112P-201ENST00000363599 104 ntBASIC1.69□□□□□ -2.14
LDB3O75112 SNORA63D-201ENST00000364359 132 ntBASIC1.69□□□□□ -2.14
LDB3O75112 RNU6-1138P-201ENST00000365359 106 ntBASIC1.69□□□□□ -2.14
LDB3O75112 MLLT10P1-201ENST00000418346 262 ntBASIC1.69□□□□□ -2.14
LDB3O75112 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.69□□□□□ -2.14
LDB3O75112 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.69□□□□□ -2.14
LDB3O75112 OR9P1P-201ENST00000496431 281 ntBASIC1.69□□□□□ -2.14
LDB3O75112 Y_RNA.666-201ENST00000516187 112 ntBASIC1.69□□□□□ -2.14
LDB3O75112 RNU6-62P-201ENST00000516526 102 ntBASIC1.69□□□□□ -2.14
LDB3O75112 RNU6-295P-201ENST00000516901 104 ntBASIC1.69□□□□□ -2.14
LDB3O75112 AL160236.1-201ENST00000556317 195 ntBASIC1.69□□□□□ -2.14
LDB3O75112 MIR4419B-201ENST00000577260 68 ntBASIC1.69□□□□□ -2.14
LDB3O75112 MIR2681-201ENST00000581814 105 ntBASIC1.69□□□□□ -2.14
LDB3O75112 AC011603.4-201ENST00000611325 277 ntBASIC1.69□□□□□ -2.14
LDB3O75112 AP001340.1-201ENST00000624405 217 ntBASIC1.69□□□□□ -2.14
LDB3O75112 MIR376A2-201ENST00000636782 80 ntBASIC1.69□□□□□ -2.14
LDB3O75112 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
LDB3O75112 MIR126-201ENST00000362291 85 ntBASIC1.68□□□□□ -2.14
LDB3O75112 RNU6-235P-201ENST00000362644 107 ntBASIC1.68□□□□□ -2.14
LDB3O75112 RNA5SP205-201ENST00000364653 136 ntBASIC1.68□□□□□ -2.14
LDB3O75112 SNORD116-14-201ENST00000383894 92 ntBASIC1.68□□□□□ -2.14
LDB3O75112 SNORD116-17-201ENST00000383929 92 ntBASIC1.68□□□□□ -2.14
LDB3O75112 SNORD61-201ENST00000384252 73 ntBASIC1.68□□□□□ -2.14
LDB3O75112 SNORD116-15-201ENST00000384445 92 ntBASIC1.68□□□□□ -2.14
LDB3O75112 SNORD116-19-201ENST00000384729 92 ntBASIC1.68□□□□□ -2.14
LDB3O75112 MIR522-201ENST00000385071 87 ntBASIC1.68□□□□□ -2.14
LDB3O75112 SNORA79-201ENST00000408376 140 ntBASIC1.68□□□□□ -2.14
LDB3O75112 RNU2-7P-201ENST00000410794 178 ntBASIC1.68□□□□□ -2.14
LDB3O75112 RNU2-40P-201ENST00000410833 196 ntBASIC1.68□□□□□ -2.14
LDB3O75112 RN7SL274P-201ENST00000492268 272 ntBASIC1.68□□□□□ -2.14
LDB3O75112 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.68□□□□□ -2.14
LDB3O75112 RNA5SP153-201ENST00000516498 76 ntBASIC1.68□□□□□ -2.14
LDB3O75112 RNU6-1270P-201ENST00000517128 108 ntBASIC1.68□□□□□ -2.14
LDB3O75112 AP001328.1-201ENST00000528550 176 ntBASIC1.68□□□□□ -2.14
LDB3O75112 AC008507.4-201ENST00000585464 127 ntBASIC1.68□□□□□ -2.14
LDB3O75112 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.68□□□□□ -2.14
LDB3O75112 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.67□□□□□ -2.14
LDB3O75112 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.67□□□□□ -2.14
LDB3O75112 SNORD50B-201ENST00000364995 70 ntBASIC1.67□□□□□ -2.14
LDB3O75112 RNU6-296P-201ENST00000384608 107 ntBASIC1.67□□□□□ -2.14
LDB3O75112 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
LDB3O75112 Y_RNA.584-201ENST00000391090 114 ntBASIC1.67□□□□□ -2.14
LDB3O75112 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.67□□□□□ -2.14
LDB3O75112 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.67□□□□□ -2.14
LDB3O75112 RNU6-659P-201ENST00000516454 104 ntBASIC1.67□□□□□ -2.14
LDB3O75112 SNORA31.10-201ENST00000516482 106 ntBASIC1.67□□□□□ -2.14
LDB3O75112 RNU6-1116P-201ENST00000517269 99 ntBASIC1.67□□□□□ -2.14
LDB3O75112 AL358944.1-201ENST00000528537 144 ntBASIC1.67□□□□□ -2.14
LDB3O75112 MIR3129-201ENST00000581095 76 ntBASIC1.67□□□□□ -2.14
LDB3O75112 uc_338.20-201ENST00000621563 178 ntBASIC1.67□□□□□ -2.14
LDB3O75112 AC084768.2-201ENST00000622736 221 ntBASIC1.67□□□□□ -2.14
LDB3O75112 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
LDB3O75112 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.67□□□□□ -2.14
LDB3O75112 RNU6-309P-201ENST00000364573 106 ntBASIC1.66□□□□□ -2.14
LDB3O75112 SNORD20-201ENST00000384550 80 ntBASIC1.66□□□□□ -2.14
LDB3O75112 RNU6-950P-201ENST00000384651 107 ntBASIC1.66□□□□□ -2.14
LDB3O75112 MIR504-201ENST00000385065 83 ntBASIC1.66□□□□□ -2.14
LDB3O75112 AC245047.3-201ENST00000429428 127 ntBASIC1.66□□□□□ -2.14
LDB3O75112 HSPE1P9-201ENST00000440046 311 ntBASIC1.66□□□□□ -2.14
LDB3O75112 AC008267.6-201ENST00000441664 139 ntBASIC1.66□□□□□ -2.14
LDB3O75112 AL049830.1-201ENST00000468034 425 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms