Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RNU6-764P-201ENST00000516396 105 ntBASIC1.21□□□□□ -2.22
NPHP1O15259 RNU6-1153P-201ENST00000516760 105 ntBASIC1.21□□□□□ -2.22
NPHP1O15259 SNORA40.15-201ENST00000516884 107 ntBASIC1.21□□□□□ -2.22
NPHP1O15259 CYP3A137P-201ENST00000562436 69 ntBASIC1.21□□□□□ -2.22
NPHP1O15259 RPL23AP91-201ENST00000569211 455 ntBASIC1.21□□□□□ -2.22
NPHP1O15259 MIR3973-201ENST00000579824 107 ntBASIC1.21□□□□□ -2.22
NPHP1O15259 MIR4661-201ENST00000582720 75 ntBASIC1.21□□□□□ -2.22
NPHP1O15259 AC008507.4-201ENST00000585464 127 ntBASIC1.21□□□□□ -2.22
NPHP1O15259 MIR373-201ENST00000362273 69 ntBASIC1.2□□□□□ -2.22
NPHP1O15259 Y_RNA.210-201ENST00000364161 110 ntBASIC1.2□□□□□ -2.22
NPHP1O15259 SNORA33.2-201ENST00000365413 134 ntBASIC1.2□□□□□ -2.22
NPHP1O15259 Y_RNA.393-201ENST00000383936 102 ntBASIC1.2□□□□□ -2.22
NPHP1O15259 RNU6-1227P-201ENST00000383981 107 ntBASIC1.2□□□□□ -2.22
NPHP1O15259 MIR532-201ENST00000385025 91 ntBASIC1.2□□□□□ -2.22
NPHP1O15259 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.2□□□□□ -2.22
NPHP1O15259 AC005534.2-201ENST00000431047 433 ntBASIC1.2□□□□□ -2.22
NPHP1O15259 SNORD11-201ENST00000459124 84 ntBASIC1.2□□□□□ -2.22
NPHP1O15259 RNU6-1132P-201ENST00000459214 107 ntBASIC1.2□□□□□ -2.22
NPHP1O15259 AC098869.1-201ENST00000481627 292 ntBASIC1.2□□□□□ -2.22
NPHP1O15259 RN7SKP164-201ENST00000516138 266 ntBASIC1.2□□□□□ -2.22
NPHP1O15259 MIR4698-201ENST00000577795 80 ntBASIC1.2□□□□□ -2.22
NPHP1O15259 SEPT14P17-201ENST00000617978 177 ntBASIC1.2□□□□□ -2.22
NPHP1O15259 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.2□□□□□ -2.22
NPHP1O15259 snoU2_19.2-201ENST00000363024 80 ntBASIC1.19□□□□□ -2.22
NPHP1O15259 Y_RNA.153-201ENST00000363615 91 ntBASIC1.19□□□□□ -2.22
NPHP1O15259 RNU6-806P-201ENST00000365147 105 ntBASIC1.19□□□□□ -2.22
NPHP1O15259 RNY1P4-201ENST00000384595 115 ntBASIC1.19□□□□□ -2.22
NPHP1O15259 MIR802-201ENST00000390235 94 ntBASIC1.19□□□□□ -2.22
NPHP1O15259 MTCO1P5-201ENST00000433573 344 ntBASIC1.19□□□□□ -2.22
NPHP1O15259 RNY3P15-201ENST00000516297 97 ntBASIC1.19□□□□□ -2.22
NPHP1O15259 AC044792.1-201ENST00000593294 196 ntBASIC1.19□□□□□ -2.22
NPHP1O15259 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
NPHP1O15259 AC134026.1-201ENST00000623249 2239 ntBASIC1.19□□□□□ -2.22
NPHP1O15259 Y_RNA.19-201ENST00000362462 99 ntBASIC1.18□□□□□ -2.22
NPHP1O15259 Y_RNA.26-201ENST00000362539 101 ntBASIC1.18□□□□□ -2.22
NPHP1O15259 RNU6-268P-201ENST00000364174 107 ntBASIC1.18□□□□□ -2.22
NPHP1O15259 RNU6-290P-201ENST00000365212 101 ntBASIC1.18□□□□□ -2.22
NPHP1O15259 MIR215-201ENST00000384858 110 ntBASIC1.18□□□□□ -2.22
NPHP1O15259 MIR216A-201ENST00000385063 110 ntBASIC1.18□□□□□ -2.22
NPHP1O15259 MTCO2P33-201ENST00000402100 465 ntBASIC1.18□□□□□ -2.22
NPHP1O15259 RNU6-985P-201ENST00000410182 104 ntBASIC1.18□□□□□ -2.22
NPHP1O15259 RPL21P38-201ENST00000418090 167 ntBASIC1.18□□□□□ -2.22
NPHP1O15259 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.18□□□□□ -2.22
NPHP1O15259 RNU6-830P-201ENST00000516353 107 ntBASIC1.18□□□□□ -2.22
NPHP1O15259 RNU6-899P-201ENST00000363947 107 ntBASIC1.17□□□□□ -2.22
NPHP1O15259 Y_RNA.330-201ENST00000365230 109 ntBASIC1.17□□□□□ -2.22
NPHP1O15259 Y_RNA.541-201ENST00000384640 113 ntBASIC1.17□□□□□ -2.22
NPHP1O15259 RNU6-763P-201ENST00000390865 106 ntBASIC1.17□□□□□ -2.22
NPHP1O15259 SNORD28B-201ENST00000390993 75 ntBASIC1.17□□□□□ -2.22
NPHP1O15259 SNORD72-201ENST00000390994 80 ntBASIC1.17□□□□□ -2.22
NPHP1O15259 POLR2J4-204ENST00000418424 324 ntBASIC1.17□□□□□ -2.22
NPHP1O15259 RPS29P28-201ENST00000446439 141 ntBASIC1.17□□□□□ -2.22
NPHP1O15259 PDCD5P2-201ENST00000507570 312 ntBASIC1.17□□□□□ -2.22
NPHP1O15259 MRPS35P2-201ENST00000508242 191 ntBASIC1.17□□□□□ -2.22
NPHP1O15259 MIR548AR-201ENST00000582191 57 ntBASIC1.17□□□□□ -2.22
NPHP1O15259 Pinc.1-201ENST00000616452 154 ntBASIC1.17□□□□□ -2.22
NPHP1O15259 AC008133.2-201ENST00000624540 351 ntBASIC1.17□□□□□ -2.22
NPHP1O15259 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
NPHP1O15259 Y_RNA.64-201ENST00000362845 102 ntBASIC1.16□□□□□ -2.22
NPHP1O15259 Y_RNA.152-201ENST00000363578 100 ntBASIC1.16□□□□□ -2.22
NPHP1O15259 RNU6-639P-201ENST00000384074 107 ntBASIC1.16□□□□□ -2.22
NPHP1O15259 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
NPHP1O15259 MIR942-201ENST00000401111 86 ntBASIC1.16□□□□□ -2.22
NPHP1O15259 AL603910.2-201ENST00000407268 136 ntBASIC1.16□□□□□ -2.22
NPHP1O15259 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.16□□□□□ -2.22
NPHP1O15259 RNU6-1143P-201ENST00000516125 104 ntBASIC1.16□□□□□ -2.22
NPHP1O15259 RN7SL793P-201ENST00000583259 296 ntBASIC1.16□□□□□ -2.22
NPHP1O15259 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.16□□□□□ -2.22
NPHP1O15259 RNU1-36P-201ENST00000365130 165 ntBASIC1.15□□□□□ -2.23
NPHP1O15259 RNU6-326P-201ENST00000365480 107 ntBASIC1.15□□□□□ -2.23
NPHP1O15259 RNU2-31P-201ENST00000516954 155 ntBASIC1.15□□□□□ -2.23
NPHP1O15259 AP003733.2-201ENST00000529409 171 ntBASIC1.15□□□□□ -2.23
NPHP1O15259 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.15□□□□□ -2.23
NPHP1O15259 RNU1-133P-201ENST00000364867 167 ntBASIC1.14□□□□□ -2.23
NPHP1O15259 RNU6-144P-201ENST00000383951 107 ntBASIC1.14□□□□□ -2.23
NPHP1O15259 AL392103.1-201ENST00000447000 198 ntBASIC1.14□□□□□ -2.23
NPHP1O15259 MTND4LP30-201ENST00000454092 297 ntBASIC1.14□□□□□ -2.23
NPHP1O15259 Y_RNA.637-201ENST00000459424 114 ntBASIC1.14□□□□□ -2.23
NPHP1O15259 RNU6-1007P-201ENST00000516586 107 ntBASIC1.14□□□□□ -2.23
NPHP1O15259 AL512605.2-201ENST00000592972 256 ntBASIC1.14□□□□□ -2.23
NPHP1O15259 AC006441.5-201ENST00000612680 209 ntBASIC1.14□□□□□ -2.23
NPHP1O15259 MIR4251-201ENST00000635819 61 ntBASIC1.14□□□□□ -2.23
NPHP1O15259 SNORA53-201ENST00000391141 249 ntBASIC1.13□□□□□ -2.23
NPHP1O15259 MIR1302-7-201ENST00000408841 72 ntBASIC1.13□□□□□ -2.23
NPHP1O15259 AL731563.1-201ENST00000442202 214 ntBASIC1.13□□□□□ -2.23
NPHP1O15259 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.13□□□□□ -2.23
NPHP1O15259 AC131055.1-201ENST00000584626 316 ntBASIC1.13□□□□□ -2.23
NPHP1O15259 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.13□□□□□ -2.23
NPHP1O15259 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
NPHP1O15259 Y_RNA.84-201ENST00000363011 104 ntBASIC1.12□□□□□ -2.23
NPHP1O15259 RNU6-1205P-201ENST00000363625 106 ntBASIC1.12□□□□□ -2.23
NPHP1O15259 Y_RNA.242-201ENST00000364473 110 ntBASIC1.12□□□□□ -2.23
NPHP1O15259 U8.17-201ENST00000391292 132 ntBASIC1.12□□□□□ -2.23
NPHP1O15259 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.12□□□□□ -2.23
NPHP1O15259 AC091959.1-201ENST00000495857 238 ntBASIC1.12□□□□□ -2.23
NPHP1O15259 ACA64.5-201ENST00000516207 127 ntBASIC1.12□□□□□ -2.23
NPHP1O15259 RNA5SP255-201ENST00000516370 107 ntBASIC1.12□□□□□ -2.23
NPHP1O15259 RNU11-2P-201ENST00000516898 142 ntBASIC1.12□□□□□ -2.23
NPHP1O15259 AC109810.1-201ENST00000534066 224 ntBASIC1.12□□□□□ -2.23
NPHP1O15259 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms