Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 Y_RNA.84-201ENST00000363011 104 ntBASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 RNU6-899P-201ENST00000363947 107 ntBASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 RNU6-326P-201ENST00000365480 107 ntBASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 MIR136-201ENST00000385207 82 ntBASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 RNU6-910P-201ENST00000390844 107 ntBASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 AL731563.1-201ENST00000442202 214 ntBASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 SNORD11-201ENST00000459124 84 ntBASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 OR2A41P-201ENST00000473586 105 ntBASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 AC091959.1-201ENST00000495857 238 ntBASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 RNU6-1143P-201ENST00000516125 104 ntBASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 AP003072.1-201ENST00000531740 145 ntBASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 RPL23AP91-201ENST00000569211 455 ntBASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 AC087685.1-201ENST00000587507 141 ntBASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 SNORD114-21-201ENST00000606412 72 ntBASIC1.15□□□□□ -2.23
CPSF3Q9UKF6 SNORA25.1-201ENST00000362326 128 ntBASIC1.14□□□□□ -2.23
CPSF3Q9UKF6 RNU6-1272P-201ENST00000362776 107 ntBASIC1.14□□□□□ -2.23
CPSF3Q9UKF6 SNORD14E-201ENST00000364009 85 ntBASIC1.14□□□□□ -2.23
CPSF3Q9UKF6 SNORA53-201ENST00000391141 249 ntBASIC1.14□□□□□ -2.23
CPSF3Q9UKF6 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.14□□□□□ -2.23
CPSF3Q9UKF6 MIR1285-1-201ENST00000408593 84 ntBASIC1.14□□□□□ -2.23
CPSF3Q9UKF6 SNRPGP14-201ENST00000435400 219 ntBASIC1.14□□□□□ -2.23
CPSF3Q9UKF6 RPL39P39-201ENST00000455840 151 ntBASIC1.14□□□□□ -2.23
CPSF3Q9UKF6 SNORA74.3-201ENST00000517108 154 ntBASIC1.14□□□□□ -2.23
CPSF3Q9UKF6 AL512605.2-201ENST00000592972 256 ntBASIC1.14□□□□□ -2.23
CPSF3Q9UKF6 AC136443.5-201ENST00000603741 370 ntBASIC1.14□□□□□ -2.23
CPSF3Q9UKF6 MIR8070-201ENST00000616510 88 ntBASIC1.14□□□□□ -2.23
CPSF3Q9UKF6 AC012676.2-201ENST00000619258 186 ntBASIC1.14□□□□□ -2.23
CPSF3Q9UKF6 AL391516.1-201ENST00000554380 2449 ntBASIC1.14□□□□□ -2.23
CPSF3Q9UKF6 RNU6-662P-201ENST00000384253 104 ntBASIC1.13□□□□□ -2.23
CPSF3Q9UKF6 SNORD72-201ENST00000390994 80 ntBASIC1.13□□□□□ -2.23
CPSF3Q9UKF6 MRPL35P3-201ENST00000421557 364 ntBASIC1.13□□□□□ -2.23
CPSF3Q9UKF6 SNORA31.4-201ENST00000516049 129 ntBASIC1.13□□□□□ -2.23
CPSF3Q9UKF6 RNA5SP102-201ENST00000516865 106 ntBASIC1.13□□□□□ -2.23
CPSF3Q9UKF6 SNORA18.7-201ENST00000516910 131 ntBASIC1.13□□□□□ -2.23
CPSF3Q9UKF6 SNORA70.22-201ENST00000517160 124 ntBASIC1.13□□□□□ -2.23
CPSF3Q9UKF6 MIR2681-201ENST00000581814 105 ntBASIC1.13□□□□□ -2.23
CPSF3Q9UKF6 AC008507.4-201ENST00000585464 127 ntBASIC1.13□□□□□ -2.23
CPSF3Q9UKF6 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
CPSF3Q9UKF6 AC013791.1-201ENST00000616619 62 ntBASIC1.13□□□□□ -2.23
CPSF3Q9UKF6 Y_RNA.217-201ENST00000364214 105 ntBASIC1.12□□□□□ -2.23
CPSF3Q9UKF6 RNU6-514P-201ENST00000384208 107 ntBASIC1.12□□□□□ -2.23
CPSF3Q9UKF6 MTND4LP30-201ENST00000454092 297 ntBASIC1.12□□□□□ -2.23
CPSF3Q9UKF6 Y_RNA.641-201ENST00000459414 105 ntBASIC1.12□□□□□ -2.23
CPSF3Q9UKF6 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.12□□□□□ -2.23
CPSF3Q9UKF6 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
CPSF3Q9UKF6 AL391903.3-201ENST00000612158 163 ntBASIC1.12□□□□□ -2.23
CPSF3Q9UKF6 AC007742.2-201ENST00000618226 398 ntBASIC1.12□□□□□ -2.23
CPSF3Q9UKF6 MIR96-201ENST00000362288 78 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 RNU6-1205P-201ENST00000363625 106 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 Y_RNA.326-201ENST00000365176 113 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 RNU6-442P-201ENST00000383968 104 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 MIR19B1-201ENST00000384829 87 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 MIR222-201ENST00000384992 110 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 MIR15B-201ENST00000385045 98 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 SNORD12-201ENST00000391002 90 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 AL603910.2-201ENST00000407268 136 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 MIR1276-201ENST00000408707 83 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 RNU6-1203P-201ENST00000410703 110 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 BTF3P11-201ENST00000426582 477 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 SNORD123-201ENST00000459473 70 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 RPS26P48-201ENST00000491713 339 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 RNU7-41P-201ENST00000515917 61 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 SNORD79.1-201ENST00000516069 84 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 SNORA27.4-201ENST00000516650 95 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 AC037487.3-201ENST00000606668 112 ntBASIC1.11□□□□□ -2.23
CPSF3Q9UKF6 RNU4-38P-201ENST00000364472 129 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 RNU6-144P-201ENST00000383951 107 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 Y_RNA.512-201ENST00000384518 102 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 RNU6-1109P-201ENST00000391187 107 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 RNU6-383P-201ENST00000410864 94 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 RPS29P28-201ENST00000446439 141 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 AC245047.8-201ENST00000456455 284 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 SERF1AP1-201ENST00000514575 187 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 RNU6-1338P-201ENST00000516328 91 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 RNU6-570P-201ENST00000517051 105 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 MIR5692C2-201ENST00000577959 77 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 MIR4764-201ENST00000580680 88 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 PRELID3BP2-201ENST00000605362 201 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 AL008718.3-201ENST00000610217 321 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 AC022140.2-201ENST00000623500 188 ntBASIC1.1□□□□□ -2.23
CPSF3Q9UKF6 RNU6-268P-201ENST00000364174 107 ntBASIC1.09□□□□□ -2.23
CPSF3Q9UKF6 SNORA22-201ENST00000383907 134 ntBASIC1.09□□□□□ -2.23
CPSF3Q9UKF6 SNORA22C-201ENST00000384614 134 ntBASIC1.09□□□□□ -2.23
CPSF3Q9UKF6 MIR520C-201ENST00000385005 87 ntBASIC1.09□□□□□ -2.23
CPSF3Q9UKF6 MTATP8P1-201ENST00000467115 207 ntBASIC1.09□□□□□ -2.23
CPSF3Q9UKF6 SCARNA24.2-201ENST00000516968 130 ntBASIC1.09□□□□□ -2.23
CPSF3Q9UKF6 AL021707.8-201ENST00000609428 183 ntBASIC1.09□□□□□ -2.23
CPSF3Q9UKF6 AP001282.2-201ENST00000616149 309 ntBASIC1.09□□□□□ -2.23
CPSF3Q9UKF6 MIR6767-201ENST00000637302 66 ntBASIC1.09□□□□□ -2.23
CPSF3Q9UKF6 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.09□□□□□ -2.24
CPSF3Q9UKF6 UBE2WP1-201ENST00000362030 340 ntBASIC1.08□□□□□ -2.24
CPSF3Q9UKF6 SNORD114-27-201ENST00000363766 70 ntBASIC1.08□□□□□ -2.24
CPSF3Q9UKF6 SNORD38C-201ENST00000384381 69 ntBASIC1.08□□□□□ -2.24
CPSF3Q9UKF6 MIR802-201ENST00000390235 94 ntBASIC1.08□□□□□ -2.24
CPSF3Q9UKF6 SNORA75.2-201ENST00000391138 150 ntBASIC1.08□□□□□ -2.24
CPSF3Q9UKF6 SNORA75.3-201ENST00000391231 150 ntBASIC1.08□□□□□ -2.24
CPSF3Q9UKF6 UBL5P1-201ENST00000507979 193 ntBASIC1.08□□□□□ -2.24
CPSF3Q9UKF6 Y_RNA.676-201ENST00000516393 96 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 235 ms