Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNU6-290P-201ENST00000365212 101 ntBASIC1.09□□□□□ -2.23
VPS28Q9UK41 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.09□□□□□ -2.23
VPS28Q9UK41 MTCO2P12-201ENST00000427426 682 ntBASIC1.09□□□□□ -2.23
VPS28Q9UK41 MTCO1P5-201ENST00000433573 344 ntBASIC1.09□□□□□ -2.23
VPS28Q9UK41 SNORD124-201ENST00000459577 104 ntBASIC1.09□□□□□ -2.23
VPS28Q9UK41 AC103810.9-201ENST00000606688 112 ntBASIC1.09□□□□□ -2.23
VPS28Q9UK41 Y_RNA.138-201ENST00000363462 102 ntBASIC1.08□□□□□ -2.24
VPS28Q9UK41 Y_RNA.158-201ENST00000363651 101 ntBASIC1.08□□□□□ -2.24
VPS28Q9UK41 SNORD114-27-201ENST00000363766 70 ntBASIC1.08□□□□□ -2.24
VPS28Q9UK41 SNORA25.9-201ENST00000365087 128 ntBASIC1.08□□□□□ -2.24
VPS28Q9UK41 RNU6-144P-201ENST00000383951 107 ntBASIC1.08□□□□□ -2.24
VPS28Q9UK41 Y_RNA.455-201ENST00000384230 98 ntBASIC1.08□□□□□ -2.24
VPS28Q9UK41 MIR1278-201ENST00000408753 81 ntBASIC1.08□□□□□ -2.24
VPS28Q9UK41 MRPL35P3-201ENST00000421557 364 ntBASIC1.08□□□□□ -2.24
VPS28Q9UK41 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.08□□□□□ -2.24
VPS28Q9UK41 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.08□□□□□ -2.24
VPS28Q9UK41 AP003716.2-201ENST00000528260 108 ntBASIC1.08□□□□□ -2.24
VPS28Q9UK41 AL512605.2-201ENST00000592972 256 ntBASIC1.08□□□□□ -2.24
VPS28Q9UK41 AL355297.3-201ENST00000604082 446 ntBASIC1.08□□□□□ -2.24
VPS28Q9UK41 AC037487.3-201ENST00000606668 112 ntBASIC1.08□□□□□ -2.24
VPS28Q9UK41 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.08□□□□□ -2.24
VPS28Q9UK41 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.08□□□□□ -2.24
VPS28Q9UK41 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
VPS28Q9UK41 SNORA25.3-201ENST00000363205 127 ntBASIC1.07□□□□□ -2.24
VPS28Q9UK41 RNU6-1205P-201ENST00000363625 106 ntBASIC1.07□□□□□ -2.24
VPS28Q9UK41 Y_RNA.276-201ENST00000364732 109 ntBASIC1.07□□□□□ -2.24
VPS28Q9UK41 RNU6-763P-201ENST00000390865 106 ntBASIC1.07□□□□□ -2.24
VPS28Q9UK41 SNRPGP14-201ENST00000435400 219 ntBASIC1.07□□□□□ -2.24
VPS28Q9UK41 SNORD11-201ENST00000459124 84 ntBASIC1.07□□□□□ -2.24
VPS28Q9UK41 MRPS35P2-201ENST00000508242 191 ntBASIC1.07□□□□□ -2.24
VPS28Q9UK41 RNU6-830P-201ENST00000516353 107 ntBASIC1.07□□□□□ -2.24
VPS28Q9UK41 SNORD114-21-201ENST00000606412 72 ntBASIC1.07□□□□□ -2.24
VPS28Q9UK41 Pinc.1-201ENST00000616452 154 ntBASIC1.07□□□□□ -2.24
VPS28Q9UK41 AC008133.2-201ENST00000624540 351 ntBASIC1.07□□□□□ -2.24
VPS28Q9UK41 Y_RNA.105-201ENST00000363182 111 ntBASIC1.06□□□□□ -2.24
VPS28Q9UK41 RNU6-268P-201ENST00000364174 107 ntBASIC1.06□□□□□ -2.24
VPS28Q9UK41 Y_RNA.330-201ENST00000365230 109 ntBASIC1.06□□□□□ -2.24
VPS28Q9UK41 RNU6-514P-201ENST00000384208 107 ntBASIC1.06□□□□□ -2.24
VPS28Q9UK41 SNORA53-201ENST00000391141 249 ntBASIC1.06□□□□□ -2.24
VPS28Q9UK41 MIR942-201ENST00000401111 86 ntBASIC1.06□□□□□ -2.24
VPS28Q9UK41 MIR1276-201ENST00000408707 83 ntBASIC1.06□□□□□ -2.24
VPS28Q9UK41 RNU6-121P-201ENST00000410525 99 ntBASIC1.06□□□□□ -2.24
VPS28Q9UK41 POLR2J4-204ENST00000418424 324 ntBASIC1.06□□□□□ -2.24
VPS28Q9UK41 PDCD5P2-201ENST00000507570 312 ntBASIC1.06□□□□□ -2.24
VPS28Q9UK41 RNU2-31P-201ENST00000516954 155 ntBASIC1.06□□□□□ -2.24
VPS28Q9UK41 AC131281.1-201ENST00000522984 164 ntBASIC1.06□□□□□ -2.24
VPS28Q9UK41 MIR3171-201ENST00000584270 74 ntBASIC1.06□□□□□ -2.24
VPS28Q9UK41 SEPT14P17-201ENST00000617978 177 ntBASIC1.06□□□□□ -2.24
VPS28Q9UK41 SNORA25.1-201ENST00000362326 128 ntBASIC1.05□□□□□ -2.24
VPS28Q9UK41 RNU6-797P-201ENST00000363101 109 ntBASIC1.05□□□□□ -2.24
VPS28Q9UK41 Y_RNA.152-201ENST00000363578 100 ntBASIC1.05□□□□□ -2.24
VPS28Q9UK41 RNU6-770P-201ENST00000363929 105 ntBASIC1.05□□□□□ -2.24
VPS28Q9UK41 MIR1185-1-201ENST00000408598 86 ntBASIC1.05□□□□□ -2.24
VPS28Q9UK41 Y_RNA.604-201ENST00000410574 102 ntBASIC1.05□□□□□ -2.24
VPS28Q9UK41 AC023449.1-201ENST00000454464 154 ntBASIC1.05□□□□□ -2.24
VPS28Q9UK41 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.05□□□□□ -2.24
VPS28Q9UK41 RNU6-1143P-201ENST00000516125 104 ntBASIC1.05□□□□□ -2.24
VPS28Q9UK41 RN7SKP164-201ENST00000516138 266 ntBASIC1.05□□□□□ -2.24
VPS28Q9UK41 AC136443.5-201ENST00000603741 370 ntBASIC1.05□□□□□ -2.24
VPS28Q9UK41 RNU6-326P-201ENST00000365480 107 ntBASIC1.04□□□□□ -2.24
VPS28Q9UK41 Y_RNA.370-201ENST00000365589 108 ntBASIC1.04□□□□□ -2.24
VPS28Q9UK41 SNORA22-201ENST00000383907 134 ntBASIC1.04□□□□□ -2.24
VPS28Q9UK41 Y_RNA.527-201ENST00000384573 102 ntBASIC1.04□□□□□ -2.24
VPS28Q9UK41 SNORA22C-201ENST00000384614 134 ntBASIC1.04□□□□□ -2.24
VPS28Q9UK41 RNU6-1067P-201ENST00000384752 107 ntBASIC1.04□□□□□ -2.24
VPS28Q9UK41 MIR499A-201ENST00000384903 122 ntBASIC1.04□□□□□ -2.24
VPS28Q9UK41 SNORD72-201ENST00000390994 80 ntBASIC1.04□□□□□ -2.24
VPS28Q9UK41 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.04□□□□□ -2.24
VPS28Q9UK41 RNY3P15-201ENST00000516297 97 ntBASIC1.04□□□□□ -2.24
VPS28Q9UK41 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.04□□□□□ -2.24
VPS28Q9UK41 AC113195.1-201ENST00000579952 141 ntBASIC1.04□□□□□ -2.24
VPS28Q9UK41 MIR548AR-201ENST00000582191 57 ntBASIC1.04□□□□□ -2.24
VPS28Q9UK41 AC013791.1-201ENST00000616619 62 ntBASIC1.04□□□□□ -2.24
VPS28Q9UK41 MIR4251-201ENST00000635819 61 ntBASIC1.04□□□□□ -2.24
VPS28Q9UK41 Y_RNA.19-201ENST00000362462 99 ntBASIC1.03□□□□□ -2.24
VPS28Q9UK41 Y_RNA.210-201ENST00000364161 110 ntBASIC1.03□□□□□ -2.24
VPS28Q9UK41 Y_RNA.214-201ENST00000364201 112 ntBASIC1.03□□□□□ -2.24
VPS28Q9UK41 SNORD28B-201ENST00000390993 75 ntBASIC1.03□□□□□ -2.24
VPS28Q9UK41 ELOCP20-201ENST00000422460 345 ntBASIC1.03□□□□□ -2.24
VPS28Q9UK41 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.03□□□□□ -2.24
VPS28Q9UK41 RNU11-2P-201ENST00000516898 142 ntBASIC1.03□□□□□ -2.24
VPS28Q9UK41 AC020661.2-201ENST00000560114 134 ntBASIC1.03□□□□□ -2.24
VPS28Q9UK41 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.03□□□□□ -2.24
VPS28Q9UK41 AL020996.3-201ENST00000606617 222 ntBASIC1.03□□□□□ -2.24
VPS28Q9UK41 AC006441.5-201ENST00000612680 209 ntBASIC1.03□□□□□ -2.24
VPS28Q9UK41 MIR6504-201ENST00000613520 61 ntBASIC1.03□□□□□ -2.24
VPS28Q9UK41 AC015726.2-201ENST00000620112 122 ntBASIC1.03□□□□□ -2.24
VPS28Q9UK41 MIR96-201ENST00000362288 78 ntBASIC1.02□□□□□ -2.25
VPS28Q9UK41 RNU6-1272P-201ENST00000362776 107 ntBASIC1.02□□□□□ -2.25
VPS28Q9UK41 snoU2_19.2-201ENST00000363024 80 ntBASIC1.02□□□□□ -2.25
VPS28Q9UK41 RNU4-38P-201ENST00000364472 129 ntBASIC1.02□□□□□ -2.25
VPS28Q9UK41 Y_RNA.541-201ENST00000384640 113 ntBASIC1.02□□□□□ -2.25
VPS28Q9UK41 U8.17-201ENST00000391292 132 ntBASIC1.02□□□□□ -2.25
VPS28Q9UK41 AL603910.2-201ENST00000407268 136 ntBASIC1.02□□□□□ -2.25
VPS28Q9UK41 RNA5SP247-201ENST00000411181 105 ntBASIC1.02□□□□□ -2.25
VPS28Q9UK41 FABP5P4-201ENST00000437203 171 ntBASIC1.02□□□□□ -2.25
VPS28Q9UK41 MIR4680-201ENST00000580906 66 ntBASIC1.02□□□□□ -2.25
VPS28Q9UK41 Y_RNA.14-201ENST00000362415 103 ntBASIC1.01□□□□□ -2.25
VPS28Q9UK41 Y_RNA.202-201ENST00000364083 110 ntBASIC1.01□□□□□ -2.25
VPS28Q9UK41 Y_RNA.216-201ENST00000364205 93 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms