Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU6-911P-201ENST00000516523 104 ntBASIC-0.36□□□□□ -2.47
SCN3AQ9NY46 RNU6-256P-201ENST00000516747 97 ntBASIC-0.36□□□□□ -2.47
SCN3AQ9NY46 AP003357.1-201ENST00000604497 148 ntBASIC-0.36□□□□□ -2.47
SCN3AQ9NY46 AC121247.2-201ENST00000604776 136 ntBASIC-0.36□□□□□ -2.47
SCN3AQ9NY46 AC022441.3-201ENST00000605737 136 ntBASIC-0.36□□□□□ -2.47
SCN3AQ9NY46 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC-0.36□□□□□ -2.47
SCN3AQ9NY46 AC244669.1-204ENST00000621564 178 ntBASIC-0.36□□□□□ -2.47
SCN3AQ9NY46 Y_RNA.172-201ENST00000363765 102 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 Y_RNA.617-201ENST00000410920 90 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 MTND2P22-201ENST00000444325 1033 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 SNORA40.12-201ENST00000516329 111 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 RNU6-1007P-201ENST00000516586 107 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 AC096720.1-201ENST00000604441 183 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 RNU6-740P-201ENST00000364734 105 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 SNORA75.1-201ENST00000391130 148 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 RNU4-55P-201ENST00000410731 137 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 MIR5706-201ENST00000579841 80 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 AC087752.4-201ENST00000605911 462 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 AL662814.1-201ENST00000617364 121 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 AC134878.1-201ENST00000619901 243 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 5S_rRNA.13-201ENST00000622298 123 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 AC073869.9-201ENST00000641610 120 ntBASIC-0.37□□□□□ -2.47
SCN3AQ9NY46 Y_RNA.456-201ENST00000384232 111 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 MIR501-201ENST00000390204 84 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 RNU2-61P-201ENST00000411069 191 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 AC091951.2-201ENST00000500762 203 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 AC018638.8-201ENST00000588755 281 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 RNA5SP275-201ENST00000363936 118 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 SNORA1.1-201ENST00000364671 133 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 Y_RNA.405-201ENST00000383979 100 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 Y_RNA.451-201ENST00000384200 100 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 Y_RNA.494-201ENST00000384432 111 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 Y_RNA.524-201ENST00000384564 100 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 Y_RNA.561-201ENST00000384694 100 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 MIR224-201ENST00000384889 81 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 MIR514A2-201ENST00000385131 88 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 MIR514A3-201ENST00000385132 88 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 MIR802-201ENST00000390235 94 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 Y_RNA.587-201ENST00000391210 103 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 POLR2KP2-201ENST00000438155 177 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 RNU6-1088P-201ENST00000516850 104 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 RNU2-60P-201ENST00000517290 128 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 RNU1-29P-201ENST00000606574 126 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 MIR3666-201ENST00000607845 111 ntBASIC-0.38□□□□□ -2.47
SCN3AQ9NY46 SNORD14E-201ENST00000364009 85 ntBASIC-0.39□□□□□ -2.47
SCN3AQ9NY46 Y_RNA.446-201ENST00000384178 104 ntBASIC-0.39□□□□□ -2.47
SCN3AQ9NY46 SNORA51.10-201ENST00000384418 136 ntBASIC-0.39□□□□□ -2.47
SCN3AQ9NY46 RNA5SP300-201ENST00000391197 107 ntBASIC-0.39□□□□□ -2.47
SCN3AQ9NY46 RNU6-710P-201ENST00000410424 105 ntBASIC-0.39□□□□□ -2.47
SCN3AQ9NY46 FCF1P4-201ENST00000448326 183 ntBASIC-0.39□□□□□ -2.47
SCN3AQ9NY46 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC-0.39□□□□□ -2.47
SCN3AQ9NY46 RNU6-475P-201ENST00000516073 104 ntBASIC-0.39□□□□□ -2.47
SCN3AQ9NY46 FTX_2.1-201ENST00000618816 94 ntBASIC-0.39□□□□□ -2.47
SCN3AQ9NY46 SNORD115-24-201ENST00000363528 82 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 Y_RNA.557-201ENST00000384680 107 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 RNU6-95P-201ENST00000384697 107 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 RNA5SP163-201ENST00000410304 99 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 MTATP6P19-201ENST00000413797 659 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 MTATP6P17-201ENST00000431030 672 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 AC060788.1-201ENST00000521318 469 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 AC125232.2-201ENST00000592457 143 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 AC093424.1-201ENST00000604999 338 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 AC020891.4-201ENST00000605745 93 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 AL391262.2-201ENST00000622466 494 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 AC010332.2-201ENST00000613083 1904 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 RNU6-1301P-201ENST00000362724 104 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 Y_RNA.364-201ENST00000365532 101 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 RNY3P5-201ENST00000384127 102 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 RNU6-30P-201ENST00000384561 107 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 SNORD28-201ENST00000384706 75 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 MIR563-201ENST00000385080 79 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 MTCO3P40-201ENST00000392516 676 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 MIR548O-201ENST00000408583 114 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 AC069271.1-201ENST00000445577 156 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 MTND1P17-201ENST00000448961 204 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 SNORD11-201ENST00000459124 84 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 RNU6-437P-201ENST00000459408 95 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 RNU6-830P-201ENST00000516353 107 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 MTATP6P24-201ENST00000576835 677 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 AC010205.1-201ENST00000616668 449 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 AC022140.2-201ENST00000623500 188 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 Z97988.1-201ENST00000637697 135 ntBASIC-0.4□□□□□ -2.47
SCN3AQ9NY46 Y_RNA.212-201ENST00000364177 102 ntBASIC-0.41□□□□□ -2.47
SCN3AQ9NY46 RNU6-601P-201ENST00000384540 107 ntBASIC-0.41□□□□□ -2.47
SCN3AQ9NY46 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC-0.41□□□□□ -2.47
SCN3AQ9NY46 RNU6-192P-201ENST00000391253 100 ntBASIC-0.41□□□□□ -2.47
SCN3AQ9NY46 RNU6-1165P-201ENST00000410119 107 ntBASIC-0.41□□□□□ -2.47
SCN3AQ9NY46 RNU7-67P-201ENST00000459003 62 ntBASIC-0.41□□□□□ -2.47
SCN3AQ9NY46 RNU6-320P-201ENST00000516511 106 ntBASIC-0.41□□□□□ -2.47
SCN3AQ9NY46 RNU7-149P-201ENST00000516739 59 ntBASIC-0.41□□□□□ -2.47
SCN3AQ9NY46 IGKV1-22-201ENST00000524313 326 ntBASIC-0.41□□□□□ -2.47
SCN3AQ9NY46 AC087685.1-201ENST00000587507 141 ntBASIC-0.41□□□□□ -2.47
SCN3AQ9NY46 MIR7107-201ENST00000611489 80 ntBASIC-0.41□□□□□ -2.47
SCN3AQ9NY46 AL391099.1-201ENST00000624635 187 ntBASIC-0.41□□□□□ -2.47
SCN3AQ9NY46 AC091304.10-201ENST00000641554 121 ntBASIC-0.41□□□□□ -2.47
SCN3AQ9NY46 Y_RNA.310-201ENST00000365063 113 ntBASIC-0.42□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 204 ms