Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 MIR424-201ENST00000362227 98 ntBASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 RNU6-1123P-201ENST00000362347 106 ntBASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 RNU6-978P-201ENST00000364371 103 ntBASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 Y_RNA.343-201ENST00000365354 112 ntBASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 RNU6-768P-201ENST00000384683 107 ntBASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 MIR17-201ENST00000385012 84 ntBASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 MIR452-201ENST00000385020 85 ntBASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 MIR660-201ENST00000385235 97 ntBASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 SNORA3.2-201ENST00000408221 125 ntBASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 RNA5SP425-201ENST00000410336 112 ntBASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 RNU6-693P-201ENST00000516134 107 ntBASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 RNU6-1116P-201ENST00000517269 99 ntBASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
TRIM39Q9HCM9 AL596028.1-201ENST00000326971 197 ntBASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 RNU6-661P-201ENST00000362409 107 ntBASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 Y_RNA.66-201ENST00000362862 102 ntBASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 RNU6-888P-201ENST00000363010 101 ntBASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 RNU6-774P-201ENST00000363238 107 ntBASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 RNU6-268P-201ENST00000364174 107 ntBASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 RNU4-11P-201ENST00000365287 132 ntBASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 Y_RNA.488-201ENST00000384403 102 ntBASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 RNU6-125P-201ENST00000384505 107 ntBASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 Y_RNA.542-201ENST00000384641 111 ntBASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 Y_RNA.666-201ENST00000516187 112 ntBASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 AC090142.3-201ENST00000519012 385 ntBASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 MIR4713-201ENST00000582691 75 ntBASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.22□□□□□ -2.05
TRIM39Q9HCM9 ZNF720P1-201ENST00000562403 1939 ntBASIC2.21□□□□□ -2.06
TRIM39Q9HCM9 RNA5SP37-201ENST00000365420 130 ntBASIC2.21□□□□□ -2.06
TRIM39Q9HCM9 MIR221-201ENST00000385135 110 ntBASIC2.21□□□□□ -2.06
TRIM39Q9HCM9 MIR548O-201ENST00000408583 114 ntBASIC2.21□□□□□ -2.06
TRIM39Q9HCM9 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.21□□□□□ -2.06
TRIM39Q9HCM9 RN7SL429P-201ENST00000479090 223 ntBASIC2.21□□□□□ -2.06
TRIM39Q9HCM9 RN7SL489P-201ENST00000486185 223 ntBASIC2.21□□□□□ -2.06
TRIM39Q9HCM9 RN7SL327P-201ENST00000488659 223 ntBASIC2.21□□□□□ -2.06
TRIM39Q9HCM9 AC099513.1-201ENST00000490423 301 ntBASIC2.21□□□□□ -2.06
TRIM39Q9HCM9 RNU6-1270P-201ENST00000517128 108 ntBASIC2.21□□□□□ -2.06
TRIM39Q9HCM9 MIR548X2-201ENST00000579776 100 ntBASIC2.21□□□□□ -2.06
TRIM39Q9HCM9 RN7SL853P-201ENST00000617250 223 ntBASIC2.21□□□□□ -2.06
TRIM39Q9HCM9 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
TRIM39Q9HCM9 Y_RNA.215-201ENST00000364204 112 ntBASIC2.2□□□□□ -2.06
TRIM39Q9HCM9 SNORD61-201ENST00000384252 73 ntBASIC2.2□□□□□ -2.06
TRIM39Q9HCM9 RNA5SP200-201ENST00000516360 103 ntBASIC2.2□□□□□ -2.06
TRIM39Q9HCM9 SNORA18.4-201ENST00000516440 124 ntBASIC2.2□□□□□ -2.06
TRIM39Q9HCM9 AC112693.2-201ENST00000556538 232 ntBASIC2.2□□□□□ -2.06
TRIM39Q9HCM9 MIR1273D-201ENST00000577266 86 ntBASIC2.2□□□□□ -2.06
TRIM39Q9HCM9 MIR4299-201ENST00000577899 72 ntBASIC2.2□□□□□ -2.06
TRIM39Q9HCM9 AL365205.2-201ENST00000594586 68 ntBASIC2.2□□□□□ -2.06
TRIM39Q9HCM9 AC009831.4-201ENST00000620744 325 ntBASIC2.2□□□□□ -2.06
TRIM39Q9HCM9 MIR3658-201ENST00000636291 56 ntBASIC2.2□□□□□ -2.06
TRIM39Q9HCM9 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.2□□□□□ -2.06
TRIM39Q9HCM9 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
TRIM39Q9HCM9 ICE2P2-201ENST00000483823 2787 ntBASIC2.2□□□□□ -2.06
TRIM39Q9HCM9 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.19□□□□□ -2.06
TRIM39Q9HCM9 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
TRIM39Q9HCM9 RNU6-818P-201ENST00000364837 108 ntBASIC2.19□□□□□ -2.06
TRIM39Q9HCM9 SNRPGP14-201ENST00000435400 219 ntBASIC2.19□□□□□ -2.06
TRIM39Q9HCM9 JTBP1-201ENST00000441314 247 ntBASIC2.19□□□□□ -2.06
TRIM39Q9HCM9 AL392103.1-201ENST00000447000 198 ntBASIC2.19□□□□□ -2.06
TRIM39Q9HCM9 AC022254.1-201ENST00000567857 235 ntBASIC2.19□□□□□ -2.06
TRIM39Q9HCM9 AC015726.2-201ENST00000620112 122 ntBASIC2.19□□□□□ -2.06
TRIM39Q9HCM9 MIR6873-201ENST00000622788 63 ntBASIC2.19□□□□□ -2.06
TRIM39Q9HCM9 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
TRIM39Q9HCM9 MIRLET7G-201ENST00000362280 84 ntBASIC2.18□□□□□ -2.06
TRIM39Q9HCM9 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
TRIM39Q9HCM9 MIR1267-201ENST00000408723 78 ntBASIC2.18□□□□□ -2.06
TRIM39Q9HCM9 RN7SKP223-201ENST00000410582 62 ntBASIC2.18□□□□□ -2.06
TRIM39Q9HCM9 RNA5SP127-201ENST00000411051 133 ntBASIC2.18□□□□□ -2.06
TRIM39Q9HCM9 RN7SKP192-201ENST00000411291 327 ntBASIC2.18□□□□□ -2.06
TRIM39Q9HCM9 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.18□□□□□ -2.06
TRIM39Q9HCM9 AC015922.2-201ENST00000435593 184 ntBASIC2.18□□□□□ -2.06
TRIM39Q9HCM9 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.18□□□□□ -2.06
TRIM39Q9HCM9 MIR6840-201ENST00000611937 71 ntBASIC2.18□□□□□ -2.06
TRIM39Q9HCM9 MIR6132-201ENST00000622083 109 ntBASIC2.18□□□□□ -2.06
TRIM39Q9HCM9 RNU4-52P-201ENST00000384209 138 ntBASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 SNORA70B-201ENST00000384210 135 ntBASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 MIR613-201ENST00000385248 95 ntBASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 SNORA48.3-201ENST00000391081 134 ntBASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 RNA5SP233-201ENST00000459153 113 ntBASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 AC079804.2-201ENST00000490376 200 ntBASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 RNU6-346P-201ENST00000516288 111 ntBASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 RNU7-25P-201ENST00000516544 62 ntBASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 SNORA44.1-201ENST00000517031 108 ntBASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 AC007751.1-201ENST00000529260 376 ntBASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 MIR4778-201ENST00000577635 80 ntBASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 AC134878.1-201ENST00000619901 243 ntBASIC2.17□□□□□ -2.06
TRIM39Q9HCM9 SNORD115-28-201ENST00000363931 81 ntBASIC2.16□□□□□ -2.06
TRIM39Q9HCM9 RNU6-1292P-201ENST00000383856 107 ntBASIC2.16□□□□□ -2.06
TRIM39Q9HCM9 MIR136-201ENST00000385207 82 ntBASIC2.16□□□□□ -2.06
TRIM39Q9HCM9 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.16□□□□□ -2.06
TRIM39Q9HCM9 RNU2-40P-201ENST00000410833 196 ntBASIC2.16□□□□□ -2.06
TRIM39Q9HCM9 RNU4-61P-201ENST00000411243 107 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 188.3 ms