Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 RN7SKP200-201ENST00000410564 320 ntBASIC2.49□□□□□ -2.01
NKX2-4Q9H2Z4 RNU2-7P-201ENST00000410794 178 ntBASIC2.49□□□□□ -2.01
NKX2-4Q9H2Z4 RNVU1-2-201ENST00000516326 135 ntBASIC2.49□□□□□ -2.01
NKX2-4Q9H2Z4 SNORD45.4-201ENST00000516629 73 ntBASIC2.49□□□□□ -2.01
NKX2-4Q9H2Z4 Y_RNA.757-201ENST00000578934 114 ntBASIC2.49□□□□□ -2.01
NKX2-4Q9H2Z4 RNU1-17P-201ENST00000363022 152 ntBASIC2.48□□□□□ -2.01
NKX2-4Q9H2Z4 Y_RNA.120-201ENST00000363304 110 ntBASIC2.48□□□□□ -2.01
NKX2-4Q9H2Z4 SNORA1-201ENST00000384107 130 ntBASIC2.48□□□□□ -2.01
NKX2-4Q9H2Z4 SNORA22C-201ENST00000384614 134 ntBASIC2.48□□□□□ -2.01
NKX2-4Q9H2Z4 SNORA80E-201ENST00000384744 137 ntBASIC2.48□□□□□ -2.01
NKX2-4Q9H2Z4 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
NKX2-4Q9H2Z4 SNORA48.1-201ENST00000390879 135 ntBASIC2.48□□□□□ -2.01
NKX2-4Q9H2Z4 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.48□□□□□ -2.01
NKX2-4Q9H2Z4 SNORA31.10-201ENST00000516482 106 ntBASIC2.48□□□□□ -2.01
NKX2-4Q9H2Z4 RNU6-1234P-201ENST00000516877 103 ntBASIC2.48□□□□□ -2.01
NKX2-4Q9H2Z4 MIR4498-201ENST00000577599 66 ntBASIC2.48□□□□□ -2.01
NKX2-4Q9H2Z4 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.48□□□□□ -2.01
NKX2-4Q9H2Z4 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
NKX2-4Q9H2Z4 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 VTRNA1-1-201ENST00000363120 99 ntBASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 SNORA63D-201ENST00000364359 132 ntBASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 Y_RNA.336-201ENST00000365307 109 ntBASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 SNORD116-14-201ENST00000383894 92 ntBASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 SNORD116-17-201ENST00000383929 92 ntBASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 RNU6-80P-201ENST00000384195 107 ntBASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 SNORD116-15-201ENST00000384445 92 ntBASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 SNORD116-19-201ENST00000384729 92 ntBASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 AL034345.1-201ENST00000407768 123 ntBASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 HMGN2P32-201ENST00000444648 269 ntBASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 RNA5SP76-201ENST00000516277 87 ntBASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 Y_RNA.692-201ENST00000516627 105 ntBASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 MIR4781-201ENST00000585250 76 ntBASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 AC092881.1-201ENST00000638218 2733 ntBASIC2.47□□□□□ -2.01
NKX2-4Q9H2Z4 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 Y_RNA.127-201ENST00000363386 109 ntBASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 RNU1-52P-201ENST00000384190 164 ntBASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 MIR520A-201ENST00000384862 85 ntBASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 MIR181B1-201ENST00000385240 110 ntBASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 AL023284.1-201ENST00000403956 276 ntBASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 RNA5SP501-201ENST00000410990 112 ntBASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 AL158823.1-201ENST00000418441 478 ntBASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 HSPE1P9-201ENST00000440046 311 ntBASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 RNU4-57P-201ENST00000515980 135 ntBASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 RNU6-1333P-201ENST00000516162 93 ntBASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 MIR5092-201ENST00000583139 88 ntBASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 AC006441.5-201ENST00000612680 209 ntBASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
NKX2-4Q9H2Z4 ICE2P2-201ENST00000483823 2787 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 Y_RNA.52-201ENST00000362760 96 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 RNU1-51P-201ENST00000365345 176 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 RNU6-1292P-201ENST00000383856 107 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 RNU6-163P-201ENST00000384396 106 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 MIR221-201ENST00000385135 110 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 U8.13-201ENST00000390842 128 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 SNORA26.9-201ENST00000391322 122 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 MIR548O-201ENST00000408583 114 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 CYCTP-201ENST00000504253 315 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 Y_RNA.686-201ENST00000516548 134 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 MIR5007-201ENST00000583098 95 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 U1.36-201ENST00000620684 176 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 MIR6733-201ENST00000635723 61 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 MIR219B-201ENST00000637023 88 ntBASIC2.45□□□□□ -2.02
NKX2-4Q9H2Z4 Y_RNA.118-201ENST00000363300 101 ntBASIC2.44□□□□□ -2.02
NKX2-4Q9H2Z4 SNORA3A-201ENST00000364113 130 ntBASIC2.44□□□□□ -2.02
NKX2-4Q9H2Z4 Y_RNA.261-201ENST00000364631 102 ntBASIC2.44□□□□□ -2.02
NKX2-4Q9H2Z4 MIR548A2-201ENST00000384956 97 ntBASIC2.44□□□□□ -2.02
NKX2-4Q9H2Z4 MIR518F-201ENST00000384973 87 ntBASIC2.44□□□□□ -2.02
NKX2-4Q9H2Z4 AC114811.1-201ENST00000507207 168 ntBASIC2.44□□□□□ -2.02
NKX2-4Q9H2Z4 MIR4529-201ENST00000578110 78 ntBASIC2.44□□□□□ -2.02
NKX2-4Q9H2Z4 RNU6-268P-201ENST00000364174 107 ntBASIC2.43□□□□□ -2.02
NKX2-4Q9H2Z4 SNORA4.2-201ENST00000365313 147 ntBASIC2.43□□□□□ -2.02
NKX2-4Q9H2Z4 MIR891A-201ENST00000401237 79 ntBASIC2.43□□□□□ -2.02
NKX2-4Q9H2Z4 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.43□□□□□ -2.02
NKX2-4Q9H2Z4 Y_RNA.690-201ENST00000516603 95 ntBASIC2.43□□□□□ -2.02
NKX2-4Q9H2Z4 SUB1P4-201ENST00000566062 339 ntBASIC2.43□□□□□ -2.02
NKX2-4Q9H2Z4 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.43□□□□□ -2.02
NKX2-4Q9H2Z4 AL603914.1-201ENST00000401964 204 ntBASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 AL590004.2-201ENST00000404787 371 ntBASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 SNRPGP14-201ENST00000435400 219 ntBASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 MTATP6P21-201ENST00000440681 189 ntBASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 RPL23AP63-201ENST00000498752 471 ntBASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 RNU5E-3P-201ENST00000515913 68 ntBASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 RNU7-25P-201ENST00000516544 62 ntBASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 RNU7-193P-201ENST00000516723 65 ntBASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 RNU6-1116P-201ENST00000517269 99 ntBASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 AC004486.1-201ENST00000546846 233 ntBASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 AL359881.1-201ENST00000602916 267 ntBASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 AC134878.1-201ENST00000619901 243 ntBASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 AC027279.3-201ENST00000625055 122 ntBASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.42□□□□□ -2.02
NKX2-4Q9H2Z4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 219.3 ms