Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 MIR7974-201ENST00000615835 79 ntBASIC1.42□□□□□ -2.18
UPF3AQ9H1J1 AC244015.1-201ENST00000622301 99 ntBASIC1.42□□□□□ -2.18
UPF3AQ9H1J1 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.42□□□□□ -2.18
UPF3AQ9H1J1 AC095038.3-201ENST00000634439 195 ntBASIC1.42□□□□□ -2.18
UPF3AQ9H1J1 RNU4-41P-201ENST00000364426 143 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 Y_RNA.304-201ENST00000365011 112 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 MIR30A-201ENST00000385092 71 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 RNU6-383P-201ENST00000410864 94 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 AC069257.2-201ENST00000441819 155 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 RNU7-94P-201ENST00000459576 63 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 COX6CP14-201ENST00000469580 174 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 RPL23AP54-201ENST00000495129 419 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 OR9P1P-201ENST00000496431 281 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 RNA5SP220-201ENST00000516298 104 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 RNY3P16-201ENST00000516338 101 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 RNA5SP61-201ENST00000516453 100 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 RNU7-116P-201ENST00000516940 62 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 AC100767.1-201ENST00000528178 123 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 AL591926.4-201ENST00000616895 298 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 AL365265.1-201ENST00000621045 234 ntBASIC1.41□□□□□ -2.18
UPF3AQ9H1J1 MIRLET7C-201ENST00000362160 84 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 RNU6-674P-201ENST00000363831 107 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.203-201ENST00000364106 102 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.253-201ENST00000364562 112 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.489-201ENST00000384410 101 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 RNU6-1031P-201ENST00000384773 107 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 RNU6-437P-201ENST00000459408 95 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 AL049830.1-201ENST00000468034 425 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 AL358944.1-201ENST00000528537 144 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 AP002004.2-201ENST00000531656 154 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 AC130289.1-201ENST00000577321 73 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 AC009779.6-201ENST00000603972 165 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 AC021506.2-201ENST00000612354 169 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 AC073349.3-201ENST00000617616 186 ntBASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
UPF3AQ9H1J1 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 RNU6-1205P-201ENST00000363625 106 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 snoU2_19.4-201ENST00000364329 80 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 RNU6-969P-201ENST00000383900 105 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.476-201ENST00000384347 108 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 MIR194-1-201ENST00000384892 85 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 MIR758-201ENST00000390227 88 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.626-201ENST00000411288 95 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 AL161935.2-201ENST00000414627 60 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 STAG3L5P-204ENST00000443759 179 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 snoU13.27-201ENST00000459278 104 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 NDUFA4P2-201ENST00000489989 244 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 RNU4-71P-201ENST00000516258 113 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.679-201ENST00000516416 91 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 AL078603.1-201ENST00000603824 313 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 AP001485.1-201ENST00000604799 199 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 AL021707.8-201ENST00000609428 183 ntBASIC1.39□□□□□ -2.19
UPF3AQ9H1J1 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 RNU6-1209P-201ENST00000363655 107 ntBASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.274-201ENST00000364714 101 ntBASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 MIR626-201ENST00000385032 94 ntBASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 RNU2-7P-201ENST00000410794 178 ntBASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 CALM2P4-201ENST00000430810 426 ntBASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 SNORD11-201ENST00000459124 84 ntBASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 SCARNA8-201ENST00000515924 131 ntBASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 RNU6-1116P-201ENST00000517269 99 ntBASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 AL160236.1-201ENST00000556317 195 ntBASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 AC141273.2-201ENST00000618989 130 ntBASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 MIR6767-201ENST00000637302 66 ntBASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
UPF3AQ9H1J1 MIR424-201ENST00000362227 98 ntBASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.24-201ENST00000362508 103 ntBASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.293-201ENST00000364908 93 ntBASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 RNU6-144P-201ENST00000383951 107 ntBASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 MIR522-201ENST00000385071 87 ntBASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 MIR526A2-201ENST00000390198 65 ntBASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 RNU6-360P-201ENST00000390944 104 ntBASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 Y_RNA.621-201ENST00000411065 96 ntBASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 RNA5SP481-201ENST00000516814 122 ntBASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 RNU2-56P-201ENST00000516826 190 ntBASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 SNORA77B-201ENST00000578179 125 ntBASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 MIR3671-201ENST00000580455 88 ntBASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 MIR4308-201ENST00000580634 81 ntBASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 AC022709.1-201ENST00000615967 87 ntBASIC1.37□□□□□ -2.19
UPF3AQ9H1J1 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
UPF3AQ9H1J1 RNU6-424P-201ENST00000384367 105 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms