Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 AC104010.1-201ENST00000616889 150 ntBASIC-1.59□□□□□ -2.66
SCAPERQ9BY12 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 Y_RNA.133-201ENST00000363428 110 ntBASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 Y_RNA.302-201ENST00000364997 102 ntBASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 RNU6-901P-201ENST00000384593 106 ntBASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 Y_RNA.588-201ENST00000391254 102 ntBASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 MTATP6P17-201ENST00000431030 672 ntBASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 RPL30P10-201ENST00000488148 337 ntBASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 Y_RNA.683-201ENST00000516508 93 ntBASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 RNA5SP33-201ENST00000516687 98 ntBASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 MRPS18CP4-201ENST00000535821 231 ntBASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 MTND1P24-201ENST00000552175 861 ntBASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 MIR7844-201ENST00000616161 122 ntBASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 MIR1246-201ENST00000636535 73 ntBASIC-1.6□□□□□ -2.67
SCAPERQ9BY12 Y_RNA.86-201ENST00000363020 111 ntBASIC-1.61□□□□□ -2.67
SCAPERQ9BY12 RNU6-1309P-201ENST00000363305 108 ntBASIC-1.61□□□□□ -2.67
SCAPERQ9BY12 RNU6-606P-201ENST00000384721 111 ntBASIC-1.61□□□□□ -2.67
SCAPERQ9BY12 SNORD12C-201ENST00000386307 89 ntBASIC-1.61□□□□□ -2.67
SCAPERQ9BY12 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC-1.61□□□□□ -2.67
SCAPERQ9BY12 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC-1.61□□□□□ -2.67
SCAPERQ9BY12 AC108059.2-201ENST00000434626 151 ntBASIC-1.61□□□□□ -2.67
SCAPERQ9BY12 Y_RNA.672-201ENST00000516289 104 ntBASIC-1.61□□□□□ -2.67
SCAPERQ9BY12 AC131281.1-201ENST00000522984 164 ntBASIC-1.61□□□□□ -2.67
SCAPERQ9BY12 AL049777.1-201ENST00000622740 518 ntBASIC-1.61□□□□□ -2.67
SCAPERQ9BY12 Y_RNA.428-201ENST00000384078 102 ntBASIC-1.62□□□□□ -2.67
SCAPERQ9BY12 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.62□□□□□ -2.67
SCAPERQ9BY12 Y_RNA.562-201ENST00000384695 113 ntBASIC-1.62□□□□□ -2.67
SCAPERQ9BY12 MIR521-1-201ENST00000384902 87 ntBASIC-1.62□□□□□ -2.67
SCAPERQ9BY12 RNA5SP261-201ENST00000410536 106 ntBASIC-1.62□□□□□ -2.67
SCAPERQ9BY12 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC-1.62□□□□□ -2.67
SCAPERQ9BY12 Z82188.1-201ENST00000436709 154 ntBASIC-1.62□□□□□ -2.67
SCAPERQ9BY12 RNU6-958P-201ENST00000516995 106 ntBASIC-1.62□□□□□ -2.67
SCAPERQ9BY12 MIR4491-201ENST00000581087 68 ntBASIC-1.62□□□□□ -2.67
SCAPERQ9BY12 AC073648.5-201ENST00000603502 305 ntBASIC-1.62□□□□□ -2.67
SCAPERQ9BY12 MTND5P18-201ENST00000445624 1801 ntBASIC-1.63□□□□□ -2.67
SCAPERQ9BY12 Y_RNA.121-201ENST00000363309 113 ntBASIC-1.63□□□□□ -2.67
SCAPERQ9BY12 Y_RNA.146-201ENST00000363549 102 ntBASIC-1.63□□□□□ -2.67
SCAPERQ9BY12 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.63□□□□□ -2.67
SCAPERQ9BY12 RNU6-74P-201ENST00000384235 107 ntBASIC-1.63□□□□□ -2.67
SCAPERQ9BY12 SNORD64-201ENST00000386683 67 ntBASIC-1.63□□□□□ -2.67
SCAPERQ9BY12 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC-1.63□□□□□ -2.67
SCAPERQ9BY12 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC-1.63□□□□□ -2.67
SCAPERQ9BY12 SNORD27.1-201ENST00000516319 72 ntBASIC-1.63□□□□□ -2.67
SCAPERQ9BY12 RNU6-1337P-201ENST00000516525 95 ntBASIC-1.63□□□□□ -2.67
SCAPERQ9BY12 Y_RNA.711-201ENST00000516993 102 ntBASIC-1.63□□□□□ -2.67
SCAPERQ9BY12 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC-1.63□□□□□ -2.67
SCAPERQ9BY12 CPDP1-201ENST00000579660 283 ntBASIC-1.63□□□□□ -2.67
SCAPERQ9BY12 AC009878.1-201ENST00000621819 340 ntBASIC-1.63□□□□□ -2.67
SCAPERQ9BY12 RNU6-502P-201ENST00000362419 108 ntBASIC-1.64□□□□□ -2.67
SCAPERQ9BY12 RNA5SP245-201ENST00000364239 121 ntBASIC-1.64□□□□□ -2.67
SCAPERQ9BY12 RNU4-66P-201ENST00000365199 138 ntBASIC-1.64□□□□□ -2.67
SCAPERQ9BY12 SNORD41.1-201ENST00000391000 69 ntBASIC-1.64□□□□□ -2.67
SCAPERQ9BY12 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC-1.64□□□□□ -2.67
SCAPERQ9BY12 RNU6-751P-201ENST00000516382 101 ntBASIC-1.64□□□□□ -2.67
SCAPERQ9BY12 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC-1.64□□□□□ -2.67
SCAPERQ9BY12 CLPTM1LP1-201ENST00000604519 484 ntBASIC-1.64□□□□□ -2.67
SCAPERQ9BY12 AC005972.2-201ENST00000604690 348 ntBASIC-1.64□□□□□ -2.67
SCAPERQ9BY12 MIR517B-201ENST00000385102 67 ntBASIC-1.65□□□□□ -2.67
SCAPERQ9BY12 MIRLET7F2-201ENST00000385277 83 ntBASIC-1.65□□□□□ -2.67
SCAPERQ9BY12 RPL30P16-201ENST00000419341 429 ntBASIC-1.65□□□□□ -2.67
SCAPERQ9BY12 MIR3179-1-201ENST00000578940 84 ntBASIC-1.65□□□□□ -2.67
SCAPERQ9BY12 MIR3179-2-201ENST00000579107 84 ntBASIC-1.65□□□□□ -2.67
SCAPERQ9BY12 MIR3179-3-201ENST00000579566 84 ntBASIC-1.65□□□□□ -2.67
SCAPERQ9BY12 MIR4423-201ENST00000580922 80 ntBASIC-1.65□□□□□ -2.67
SCAPERQ9BY12 MIR3179-4-201ENST00000617599 84 ntBASIC-1.65□□□□□ -2.67
SCAPERQ9BY12 MIR9-2-201ENST00000384838 87 ntBASIC-1.66□□□□□ -2.67
SCAPERQ9BY12 RNU6-913P-201ENST00000390913 95 ntBASIC-1.66□□□□□ -2.67
SCAPERQ9BY12 RNU6-437P-201ENST00000459408 95 ntBASIC-1.66□□□□□ -2.67
SCAPERQ9BY12 AL133173.2-201ENST00000614270 90 ntBASIC-1.66□□□□□ -2.67
SCAPERQ9BY12 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.66□□□□□ -2.68
SCAPERQ9BY12 RNU6-1329P-201ENST00000365664 107 ntBASIC-1.66□□□□□ -2.68
SCAPERQ9BY12 RNU6-431P-201ENST00000383874 107 ntBASIC-1.66□□□□□ -2.68
SCAPERQ9BY12 SNORA72.6-201ENST00000384520 129 ntBASIC-1.66□□□□□ -2.68
SCAPERQ9BY12 U8.15-201ENST00000390947 134 ntBASIC-1.66□□□□□ -2.68
SCAPERQ9BY12 HLA-S-202ENST00000425174 53 ntBASIC-1.66□□□□□ -2.68
SCAPERQ9BY12 USP9YP16-201ENST00000430287 407 ntBASIC-1.66□□□□□ -2.68
SCAPERQ9BY12 AC010655.3-201ENST00000478818 450 ntBASIC-1.66□□□□□ -2.68
SCAPERQ9BY12 RNU7-188P-201ENST00000517063 64 ntBASIC-1.66□□□□□ -2.68
SCAPERQ9BY12 AL391834.2-201ENST00000609982 546 ntBASIC-1.66□□□□□ -2.68
SCAPERQ9BY12 AC109347.2-201ENST00000610220 349 ntBASIC-1.66□□□□□ -2.68
SCAPERQ9BY12 AL158063.1-201ENST00000615349 536 ntBASIC-1.66□□□□□ -2.68
SCAPERQ9BY12 MIR6851-201ENST00000617060 67 ntBASIC-1.66□□□□□ -2.68
SCAPERQ9BY12 Y_RNA.6-201ENST00000362350 114 ntBASIC-1.67□□□□□ -2.68
SCAPERQ9BY12 RNU6-509P-201ENST00000363519 107 ntBASIC-1.67□□□□□ -2.68
SCAPERQ9BY12 Y_RNA.243-201ENST00000364481 109 ntBASIC-1.67□□□□□ -2.68
SCAPERQ9BY12 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-1.67□□□□□ -2.68
SCAPERQ9BY12 AC244505.6-201ENST00000452829 130 ntBASIC-1.67□□□□□ -2.68
SCAPERQ9BY12 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-1.67□□□□□ -2.68
SCAPERQ9BY12 AC104576.1-201ENST00000524225 88 ntBASIC-1.67□□□□□ -2.68
SCAPERQ9BY12 AC024405.2-202ENST00000532731 184 ntBASIC-1.67□□□□□ -2.68
SCAPERQ9BY12 AC004223.4-201ENST00000612426 332 ntBASIC-1.67□□□□□ -2.68
SCAPERQ9BY12 MIR382-201ENST00000637119 76 ntBASIC-1.67□□□□□ -2.68
SCAPERQ9BY12 MIR410-201ENST00000362222 80 ntBASIC-1.68□□□□□ -2.68
SCAPERQ9BY12 SNORD50.1-201ENST00000362987 71 ntBASIC-1.68□□□□□ -2.68
SCAPERQ9BY12 Y_RNA.110-201ENST00000363220 99 ntBASIC-1.68□□□□□ -2.68
SCAPERQ9BY12 MIR518B-201ENST00000385127 83 ntBASIC-1.68□□□□□ -2.68
SCAPERQ9BY12 GPR143P-201ENST00000434155 205 ntBASIC-1.68□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms