| SHANK2-AS3 | Q9BTD1 | Y_RNA.639-201 | ENST00000458981 | 102 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU7-141P-201 | ENST00000459304 | 62 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC131956.1-201 | ENST00000506420 | 258 nt | TSL 2 BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU7-110P-201 | ENST00000516891 | 62 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU6-1223P-201 | ENST00000517124 | 104 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC024382.1-201 | ENST00000520224 | 292 nt | TSL 3 BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC036111.3-201 | ENST00000526389 | 112 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC040926.1-201 | ENST00000530195 | 238 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC109810.1-201 | ENST00000534066 | 224 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AP001178.1-201 | ENST00000584679 | 268 nt | TSL 3 BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC087685.1-201 | ENST00000587507 | 141 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RMST_2.1-201 | ENST00000617263 | 136 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | MIR548AY-201 | ENST00000617669 | 107 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | MIR6835-201 | ENST00000621552 | 64 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | SLC8A1-AS1-230 | ENST00000627538 | 212 nt | TSL 5 BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | MIR6767-201 | ENST00000637302 | 66 nt | BASIC | 0.5 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | HIF1A-204 | ENST00000539097 | 3956 nt | TSL 1 (best) BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | Y_RNA.31-201 | ENST00000362574 | 102 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU4-80P-201 | ENST00000363200 | 141 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | Y_RNA.471-201 | ENST00000384312 | 102 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU6-102P-201 | ENST00000384485 | 104 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | Y_RNA.509-201 | ENST00000384506 | 99 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | MIR15B-201 | ENST00000385045 | 98 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU6ATAC31P-201 | ENST00000408513 | 126 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RPS26P5-201 | ENST00000418544 | 335 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | LINC01866-201 | ENST00000421181 | 201 nt | TSL 3 BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | LINC02534-201 | ENST00000446525 | 283 nt | TSL 3 BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | SNORD11-201 | ENST00000459124 | 84 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RPL23AP54-201 | ENST00000495129 | 419 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU6-191P-201 | ENST00000516295 | 94 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU6-1046P-201 | ENST00000516538 | 107 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC004817.2-201 | ENST00000561794 | 651 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RPS29P30-201 | ENST00000600975 | 111 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AL590095.2-201 | ENST00000604136 | 117 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC006157.1-201 | ENST00000611750 | 366 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | MIR6516-201 | ENST00000630554 | 81 nt | BASIC | 0.49 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | Y_RNA.36-201 | ENST00000362602 | 112 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | Y_RNA.136-201 | ENST00000363444 | 102 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | Y_RNA.148-201 | ENST00000363557 | 117 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNA5SP48-201 | ENST00000363969 | 126 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | MIR598-201 | ENST00000384868 | 97 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | SNORD72-201 | ENST00000390994 | 80 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | SNORA36B-201 | ENST00000410438 | 131 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU6-733P-201 | ENST00000410759 | 104 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | PMCHL1-202 | ENST00000423102 | 261 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | FABP5P4-201 | ENST00000437203 | 171 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | HSPE1P25-201 | ENST00000455484 | 251 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU2-13P-201 | ENST00000515909 | 113 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU11-2P-201 | ENST00000516898 | 142 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | Y_RNA.715-201 | ENST00000517082 | 110 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | MIR4300-201 | ENST00000581016 | 96 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC005357.1-201 | ENST00000588399 | 301 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC104695.3-201 | ENST00000604052 | 296 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AL353765.1-201 | ENST00000605514 | 183 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | SNORD113-5-201 | ENST00000607261 | 78 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC006441.5-201 | ENST00000612680 | 209 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | MIR6788-201 | ENST00000618842 | 66 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC008133.2-201 | ENST00000624540 | 351 nt | BASIC | 0.48 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | Y_RNA.105-201 | ENST00000363182 | 111 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | SNORD14E-201 | ENST00000364009 | 85 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU6-654P-201 | ENST00000364373 | 107 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | Y_RNA.419-201 | ENST00000384041 | 102 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | Y_RNA.526-201 | ENST00000384572 | 110 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | MIR92A1-201 | ENST00000385233 | 78 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | SNORD115-46-201 | ENST00000390982 | 71 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | MIR548J-201 | ENST00000408833 | 112 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | MTATP6P23-201 | ENST00000440153 | 476 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU6-437P-201 | ENST00000459408 | 95 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | Y_RNA.637-201 | ENST00000459424 | 114 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | COX6CP6-201 | ENST00000490840 | 228 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | SEPT14P8-201 | ENST00000508026 | 178 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU4-57P-201 | ENST00000515980 | 135 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | RNU6-496P-201 | ENST00000516145 | 99 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | Y_RNA.713-201 | ENST00000517013 | 96 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC126177.2-201 | ENST00000552154 | 452 nt | TSL 3 BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC023827.1-201 | ENST00000569247 | 97 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | AC104465.1-201 | ENST00000611365 | 139 nt | BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | LINC01378-205 | ENST00000615833 | 158 nt | TSL 5 BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | ZBTB41-201 | ENST00000367405 | 8478 nt | APPRIS P1 TSL 1 (best) BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | SENP7-207 | ENST00000394095 | 4945 nt | APPRIS P3 TSL 1 (best) BASIC | 0.47 | □□□□□ -2.33 | | |
| SHANK2-AS3 | Q9BTD1 | MTND4P29-201 | ENST00000503122 | 1372 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | MIR96-201 | ENST00000362288 | 78 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | RNU6-369P-201 | ENST00000362515 | 102 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | Y_RNA.330-201 | ENST00000365230 | 109 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | RNU6-110P-201 | ENST00000384508 | 104 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | MIR508-201 | ENST00000384857 | 115 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | RNU6-121P-201 | ENST00000410525 | 99 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | AJ239322.2-201 | ENST00000421696 | 575 nt | TSL 5 BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | AC024067.1-201 | ENST00000426199 | 223 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | AC113410.1-201 | ENST00000505029 | 247 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | RNU6-764P-201 | ENST00000516396 | 105 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | Y_RNA.714-201 | ENST00000517065 | 90 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | AC087362.2-201 | ENST00000529325 | 256 nt | TSL 3 BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | RPL23AP91-201 | ENST00000569211 | 455 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | MIR5000-201 | ENST00000577717 | 103 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | hsa-mir-548d-2.1-201 | ENST00000582790 | 97 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | RAC1P9-201 | ENST00000604990 | 392 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | AL021707.8-201 | ENST00000609428 | 183 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | Pinc.1-201 | ENST00000616452 | 154 nt | BASIC | 0.46 | □□□□□ -2.34 | | |
| SHANK2-AS3 | Q9BTD1 | AC007742.2-201 | ENST00000618226 | 398 nt | BASIC | 0.46 | □□□□□ -2.34 | | |