Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RNU6-1318P-201ENST00000365389 103 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 AC004965.1-201ENST00000413033 213 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 HMGN2P38-201ENST00000423806 265 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 AC114811.1-201ENST00000507207 168 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 RN7SKP164-201ENST00000516138 266 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 SNORD45.4-201ENST00000516629 73 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 SUMO2P16-201ENST00000519475 264 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 MIR4498-201ENST00000577599 66 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 MIR4778-201ENST00000577635 80 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 Z83818.1-201ENST00000603584 150 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 AL645939.4-201ENST00000604495 135 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 AC103810.8-201ENST00000607347 118 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 uc_338.4-201ENST00000616635 176 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 AC095038.3-201ENST00000634439 195 ntBASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
PAAF1Q9BRP4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 MIR424-201ENST00000362227 98 ntBASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 Y_RNA.242-201ENST00000364473 110 ntBASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 U8.5-201ENST00000364528 136 ntBASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 RNA5SP259-201ENST00000365541 109 ntBASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 MIR660-201ENST00000385235 97 ntBASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 MIR891A-201ENST00000401237 79 ntBASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 AP1B1P2-201ENST00000416196 106 ntBASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 snoU13.9-201ENST00000458927 103 ntBASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 SNORD11-201ENST00000459124 84 ntBASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 MIR3618-201ENST00000580330 88 ntBASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 MIR4762-201ENST00000585261 75 ntBASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 AC087685.1-201ENST00000587507 141 ntBASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 MIR8063-201ENST00000621930 81 ntBASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.75□□□□□ -2.13
PAAF1Q9BRP4 Y_RNA.7-201ENST00000362352 102 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 RNU6-1020P-201ENST00000363684 107 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 snoU2_19.4-201ENST00000364329 80 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 RNU4-70P-201ENST00000384579 139 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 MIR513A1-201ENST00000385138 129 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 MIR616-201ENST00000385293 97 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 MT-TT-201ENST00000387460 66 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 SNORA67.5-201ENST00000391036 107 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 RN7SKP101-201ENST00000411376 320 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 AL138752.1-201ENST00000452964 351 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 AC093850.1-201ENST00000454121 251 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 NDUFA4P2-201ENST00000489989 244 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 RNA5SP364-201ENST00000516938 78 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 RNU2-4P-201ENST00000606190 192 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 AC027279.3-201ENST00000625055 122 ntBASIC1.74□□□□□ -2.13
PAAF1Q9BRP4 MIRLET7C-201ENST00000362160 84 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 Y_RNA.274-201ENST00000364714 101 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 RNU6-200P-201ENST00000364743 107 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 SNORD50B-201ENST00000364995 70 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 RNU6-381P-201ENST00000391259 108 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 AL606845.1-201ENST00000404881 255 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 MIR1323-201ENST00000408090 73 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 Y_RNA.793-201ENST00000411222 111 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 MTND5P15-201ENST00000434246 349 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 HMGN2P32-201ENST00000444648 269 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 HSPE1P24-201ENST00000450782 238 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 RNU6-138P-201ENST00000515952 107 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 RNU7-149P-201ENST00000516739 59 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 RNU6-453P-201ENST00000516819 85 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 Pinc.1-201ENST00000616452 154 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 AC106754.2-201ENST00000623006 233 ntBASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
PAAF1Q9BRP4 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
PAAF1Q9BRP4 RNU6-833P-201ENST00000363486 107 ntBASIC1.72□□□□□ -2.13
PAAF1Q9BRP4 RNU6-103P-201ENST00000363686 107 ntBASIC1.72□□□□□ -2.13
PAAF1Q9BRP4 RNU1-42P-201ENST00000364033 160 ntBASIC1.72□□□□□ -2.13
PAAF1Q9BRP4 RNU6-442P-201ENST00000383968 104 ntBASIC1.72□□□□□ -2.13
PAAF1Q9BRP4 RNU6-1228P-201ENST00000391014 107 ntBASIC1.72□□□□□ -2.13
PAAF1Q9BRP4 Y_RNA.644-201ENST00000459006 113 ntBASIC1.72□□□□□ -2.13
PAAF1Q9BRP4 Y_RNA.797-201ENST00000515977 94 ntBASIC1.72□□□□□ -2.13
PAAF1Q9BRP4 Y_RNA.674-201ENST00000516362 113 ntBASIC1.72□□□□□ -2.13
PAAF1Q9BRP4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.72□□□□□ -2.13
PAAF1Q9BRP4 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
PAAF1Q9BRP4 MIR4448-201ENST00000584360 86 ntBASIC1.72□□□□□ -2.13
PAAF1Q9BRP4 snoU13.31-201ENST00000607291 104 ntBASIC1.72□□□□□ -2.13
PAAF1Q9BRP4 AL391903.3-201ENST00000612158 163 ntBASIC1.72□□□□□ -2.13
PAAF1Q9BRP4 Y_RNA.4-201ENST00000362333 112 ntBASIC1.71□□□□□ -2.14
PAAF1Q9BRP4 Y_RNA.164-201ENST00000363709 102 ntBASIC1.71□□□□□ -2.14
PAAF1Q9BRP4 Y_RNA.238-201ENST00000364441 102 ntBASIC1.71□□□□□ -2.14
PAAF1Q9BRP4 RN7SKP51-201ENST00000410781 304 ntBASIC1.71□□□□□ -2.14
PAAF1Q9BRP4 Y_RNA.622-201ENST00000411091 108 ntBASIC1.71□□□□□ -2.14
PAAF1Q9BRP4 RNU7-95P-201ENST00000459222 64 ntBASIC1.71□□□□□ -2.14
PAAF1Q9BRP4 AC005908.1-201ENST00000468701 347 ntBASIC1.71□□□□□ -2.14
PAAF1Q9BRP4 RN7SL274P-201ENST00000492268 272 ntBASIC1.71□□□□□ -2.14
PAAF1Q9BRP4 AC108729.3-201ENST00000513484 108 ntBASIC1.71□□□□□ -2.14
PAAF1Q9BRP4 MIR3198-2-201ENST00000577868 80 ntBASIC1.71□□□□□ -2.14
PAAF1Q9BRP4 AC008507.4-201ENST00000585464 127 ntBASIC1.71□□□□□ -2.14
PAAF1Q9BRP4 AL021707.8-201ENST00000609428 183 ntBASIC1.71□□□□□ -2.14
PAAF1Q9BRP4 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.71□□□□□ -2.14
PAAF1Q9BRP4 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.71□□□□□ -2.14
PAAF1Q9BRP4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
PAAF1Q9BRP4 RNU6-199P-201ENST00000362954 107 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 275 ms