Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 RNU7-21P-201ENST00000459430 62 ntBASIC0.92□□□□□ -2.26
SSX3Q99909 NDUFA4P2-201ENST00000489989 244 ntBASIC0.92□□□□□ -2.26
SSX3Q99909 RNU7-41P-201ENST00000515917 61 ntBASIC0.92□□□□□ -2.26
SSX3Q99909 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.92□□□□□ -2.26
SSX3Q99909 RNU6-764P-201ENST00000516396 105 ntBASIC0.92□□□□□ -2.26
SSX3Q99909 RNU6-1007P-201ENST00000516586 107 ntBASIC0.92□□□□□ -2.26
SSX3Q99909 Y_RNA.711-201ENST00000516993 102 ntBASIC0.92□□□□□ -2.26
SSX3Q99909 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
SSX3Q99909 AC068700.1-201ENST00000565862 3754 ntBASIC0.91□□□□□ -2.26
SSX3Q99909 MIR103A2-201ENST00000362154 78 ntBASIC0.91□□□□□ -2.26
SSX3Q99909 RNA5SP264-201ENST00000363115 107 ntBASIC0.91□□□□□ -2.26
SSX3Q99909 RNU6-899P-201ENST00000363947 107 ntBASIC0.91□□□□□ -2.26
SSX3Q99909 SNORD114-24-201ENST00000365029 72 ntBASIC0.91□□□□□ -2.26
SSX3Q99909 MIR499A-201ENST00000384903 122 ntBASIC0.91□□□□□ -2.26
SSX3Q99909 Y_RNA.581-201ENST00000391017 97 ntBASIC0.91□□□□□ -2.26
SSX3Q99909 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.91□□□□□ -2.26
SSX3Q99909 MTCO1P5-201ENST00000433573 344 ntBASIC0.91□□□□□ -2.26
SSX3Q99909 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.91□□□□□ -2.26
SSX3Q99909 PDCD5P2-201ENST00000507570 312 ntBASIC0.91□□□□□ -2.26
SSX3Q99909 MRPS35P2-201ENST00000508242 191 ntBASIC0.91□□□□□ -2.26
SSX3Q99909 RNA5SP102-201ENST00000516865 106 ntBASIC0.91□□□□□ -2.26
SSX3Q99909 AC008507.4-201ENST00000585464 127 ntBASIC0.91□□□□□ -2.26
SSX3Q99909 RNU6-797P-201ENST00000363101 109 ntBASIC0.9□□□□□ -2.27
SSX3Q99909 SNORA25.3-201ENST00000363205 127 ntBASIC0.9□□□□□ -2.27
SSX3Q99909 Y_RNA.158-201ENST00000363651 101 ntBASIC0.9□□□□□ -2.27
SSX3Q99909 RNA5SP48-201ENST00000363969 126 ntBASIC0.9□□□□□ -2.27
SSX3Q99909 Y_RNA.455-201ENST00000384230 98 ntBASIC0.9□□□□□ -2.27
SSX3Q99909 MIR1287-201ENST00000408492 90 ntBASIC0.9□□□□□ -2.27
SSX3Q99909 MIR1276-201ENST00000408707 83 ntBASIC0.9□□□□□ -2.27
SSX3Q99909 Y_RNA.604-201ENST00000410574 102 ntBASIC0.9□□□□□ -2.27
SSX3Q99909 POLR2J4-204ENST00000418424 324 ntBASIC0.9□□□□□ -2.27
SSX3Q99909 AC131281.1-201ENST00000522984 164 ntBASIC0.9□□□□□ -2.27
SSX3Q99909 MIR3171-201ENST00000584270 74 ntBASIC0.9□□□□□ -2.27
SSX3Q99909 AL512605.2-201ENST00000592972 256 ntBASIC0.9□□□□□ -2.27
SSX3Q99909 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.9□□□□□ -2.27
SSX3Q99909 Y_RNA.105-201ENST00000363182 111 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 RNU6-1205P-201ENST00000363625 106 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 RNU6-770P-201ENST00000363929 105 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 Y_RNA.242-201ENST00000364473 110 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 RNU6-290P-201ENST00000365212 101 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 Y_RNA.330-201ENST00000365230 109 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 Y_RNA.527-201ENST00000384573 102 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 MIR200A-201ENST00000384875 90 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 RNU6-763P-201ENST00000390865 106 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 SNORA53-201ENST00000391141 249 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 RNU6-121P-201ENST00000410525 99 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 MTND4LP30-201ENST00000454092 297 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.89□□□□□ -2.27
SSX3Q99909 RNY3P15-201ENST00000516297 97 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 AL355297.3-201ENST00000604082 446 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 AC037487.3-201ENST00000606668 112 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 MIR6504-201ENST00000613520 61 ntBASIC0.89□□□□□ -2.27
SSX3Q99909 Y_RNA.152-201ENST00000363578 100 ntBASIC0.88□□□□□ -2.27
SSX3Q99909 Y_RNA.216-201ENST00000364205 93 ntBASIC0.88□□□□□ -2.27
SSX3Q99909 RNU1-36P-201ENST00000365130 165 ntBASIC0.88□□□□□ -2.27
SSX3Q99909 RNU6-144P-201ENST00000383951 107 ntBASIC0.88□□□□□ -2.27
SSX3Q99909 RNU6-514P-201ENST00000384208 107 ntBASIC0.88□□□□□ -2.27
SSX3Q99909 MIR942-201ENST00000401111 86 ntBASIC0.88□□□□□ -2.27
SSX3Q99909 ELOCP20-201ENST00000422460 345 ntBASIC0.88□□□□□ -2.27
SSX3Q99909 AC023449.1-201ENST00000454464 154 ntBASIC0.88□□□□□ -2.27
SSX3Q99909 Pinc.1-201ENST00000616452 154 ntBASIC0.88□□□□□ -2.27
SSX3Q99909 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.88□□□□□ -2.27
SSX3Q99909 SNORA25.1-201ENST00000362326 128 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 Y_RNA.19-201ENST00000362462 99 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 Y_RNA.191-201ENST00000363972 113 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 Y_RNA.210-201ENST00000364161 110 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 RNU6-268P-201ENST00000364174 107 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 Y_RNA.214-201ENST00000364201 112 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 SNORD72-201ENST00000390994 80 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 SNRPGP14-201ENST00000435400 219 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.87□□□□□ -2.27
SSX3Q99909 SNORD11-201ENST00000459124 84 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 AC098869.1-201ENST00000481627 292 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.87□□□□□ -2.27
SSX3Q99909 RNU2-31P-201ENST00000516954 155 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 AC020661.2-201ENST00000560114 134 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 AC113195.1-201ENST00000579952 141 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 MIR548AR-201ENST00000582191 57 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 AC211469.2-201ENST00000605461 205 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.87□□□□□ -2.27
SSX3Q99909 AC008133.2-201ENST00000624540 351 ntBASIC0.87□□□□□ -2.27
SSX3Q99909 SNORD114-27-201ENST00000363766 70 ntBASIC0.86□□□□□ -2.27
SSX3Q99909 Y_RNA.276-201ENST00000364732 109 ntBASIC0.86□□□□□ -2.27
SSX3Q99909 Y_RNA.541-201ENST00000384640 113 ntBASIC0.86□□□□□ -2.27
SSX3Q99909 MIR1185-1-201ENST00000408598 86 ntBASIC0.86□□□□□ -2.27
SSX3Q99909 RNU6-1143P-201ENST00000516125 104 ntBASIC0.86□□□□□ -2.27
SSX3Q99909 RNU6-830P-201ENST00000516353 107 ntBASIC0.86□□□□□ -2.27
SSX3Q99909 AP003716.2-201ENST00000528260 108 ntBASIC0.86□□□□□ -2.27
SSX3Q99909 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.86□□□□□ -2.27
SSX3Q99909 MIR4680-201ENST00000580906 66 ntBASIC0.86□□□□□ -2.27
SSX3Q99909 AC136443.5-201ENST00000603741 370 ntBASIC0.86□□□□□ -2.27
SSX3Q99909 AC013791.1-201ENST00000616619 62 ntBASIC0.86□□□□□ -2.27
SSX3Q99909 SEPT14P17-201ENST00000617978 177 ntBASIC0.86□□□□□ -2.27
SSX3Q99909 MIR4251-201ENST00000635819 61 ntBASIC0.86□□□□□ -2.27
SSX3Q99909 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.86□□□□□ -2.27
SSX3Q99909 snoU2_19.2-201ENST00000363024 80 ntBASIC0.85□□□□□ -2.27
SSX3Q99909 Y_RNA.202-201ENST00000364083 110 ntBASIC0.85□□□□□ -2.27
SSX3Q99909 RNU6-326P-201ENST00000365480 107 ntBASIC0.85□□□□□ -2.27
SSX3Q99909 RNU6-1067P-201ENST00000384752 107 ntBASIC0.85□□□□□ -2.27
SSX3Q99909 MIR215-201ENST00000384858 110 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 143.8 ms