Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RNA5SP127-201ENST00000411051 133 ntBASIC2.4□□□□□ -2.03
CLIP3Q96DZ5 AC018634.1-201ENST00000437554 401 ntBASIC2.4□□□□□ -2.03
CLIP3Q96DZ5 AL359075.3-201ENST00000613288 217 ntBASIC2.4□□□□□ -2.03
CLIP3Q96DZ5 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
CLIP3Q96DZ5 SNORA1-201ENST00000384107 130 ntBASIC2.39□□□□□ -2.03
CLIP3Q96DZ5 RNA5SP467-201ENST00000391274 118 ntBASIC2.39□□□□□ -2.03
CLIP3Q96DZ5 SNORA26-201ENST00000391286 122 ntBASIC2.39□□□□□ -2.03
CLIP3Q96DZ5 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.39□□□□□ -2.03
CLIP3Q96DZ5 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.39□□□□□ -2.03
CLIP3Q96DZ5 RNU1-142P-201ENST00000516682 145 ntBASIC2.39□□□□□ -2.03
CLIP3Q96DZ5 RNU7-128P-201ENST00000517247 62 ntBASIC2.39□□□□□ -2.03
CLIP3Q96DZ5 AC024995.1-201ENST00000523014 93 ntBASIC2.39□□□□□ -2.03
CLIP3Q96DZ5 MIR4662B-201ENST00000579498 81 ntBASIC2.39□□□□□ -2.03
CLIP3Q96DZ5 AC025166.1-201ENST00000612411 163 ntBASIC2.39□□□□□ -2.03
CLIP3Q96DZ5 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.39□□□□□ -2.03
CLIP3Q96DZ5 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.39□□□□□ -2.03
CLIP3Q96DZ5 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
CLIP3Q96DZ5 MTND5P18-201ENST00000445624 1801 ntBASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 RNA5SP276-201ENST00000362580 94 ntBASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 RNU6-1019P-201ENST00000364424 107 ntBASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 RNU6-880P-201ENST00000384526 107 ntBASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 MIR548A1-201ENST00000385041 97 ntBASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 RNA5SP323-201ENST00000391094 133 ntBASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 HMGN2P38-201ENST00000423806 265 ntBASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 AC023449.1-201ENST00000454464 154 ntBASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 Y_RNA.649-201ENST00000459077 103 ntBASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 SNORA18.4-201ENST00000516440 124 ntBASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 RNU6-1096P-201ENST00000517089 102 ntBASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 AL590808.1-201ENST00000618696 141 ntBASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 AL121890.5-201ENST00000620848 304 ntBASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 AC005336.3-201ENST00000623833 2679 ntBASIC2.38□□□□□ -2.03
CLIP3Q96DZ5 AL596028.1-201ENST00000326971 197 ntBASIC2.37□□□□□ -2.03
CLIP3Q96DZ5 Y_RNA.346-201ENST00000365385 112 ntBASIC2.37□□□□□ -2.03
CLIP3Q96DZ5 RNU6-1186P-201ENST00000410429 97 ntBASIC2.37□□□□□ -2.03
CLIP3Q96DZ5 AF228730.3-201ENST00000436691 102 ntBASIC2.37□□□□□ -2.03
CLIP3Q96DZ5 AL021397.1-201ENST00000451806 248 ntBASIC2.37□□□□□ -2.03
CLIP3Q96DZ5 MRPS17P9-201ENST00000511924 393 ntBASIC2.37□□□□□ -2.03
CLIP3Q96DZ5 RNU6-365P-201ENST00000517113 106 ntBASIC2.37□□□□□ -2.03
CLIP3Q96DZ5 AC091544.4-201ENST00000555268 342 ntBASIC2.37□□□□□ -2.03
CLIP3Q96DZ5 SUB1P4-201ENST00000566062 339 ntBASIC2.37□□□□□ -2.03
CLIP3Q96DZ5 MIR4287-201ENST00000579398 78 ntBASIC2.37□□□□□ -2.03
CLIP3Q96DZ5 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.37□□□□□ -2.03
CLIP3Q96DZ5 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.36□□□□□ -2.03
CLIP3Q96DZ5 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.36□□□□□ -2.03
CLIP3Q96DZ5 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
CLIP3Q96DZ5 MIR450A1-201ENST00000362262 91 ntBASIC2.36□□□□□ -2.03
CLIP3Q96DZ5 SNORA33-201ENST00000363664 130 ntBASIC2.36□□□□□ -2.03
CLIP3Q96DZ5 AC069257.2-201ENST00000441819 155 ntBASIC2.36□□□□□ -2.03
CLIP3Q96DZ5 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.36□□□□□ -2.03
CLIP3Q96DZ5 AC090255.1-201ENST00000495779 349 ntBASIC2.36□□□□□ -2.03
CLIP3Q96DZ5 RNU7-99P-201ENST00000516271 62 ntBASIC2.36□□□□□ -2.03
CLIP3Q96DZ5 RNU6-126P-201ENST00000516685 103 ntBASIC2.36□□□□□ -2.03
CLIP3Q96DZ5 MIR514B-201ENST00000516774 80 ntBASIC2.36□□□□□ -2.03
CLIP3Q96DZ5 SNORD53-201ENST00000579969 78 ntBASIC2.36□□□□□ -2.03
CLIP3Q96DZ5 MIR3129-201ENST00000581095 76 ntBASIC2.36□□□□□ -2.03
CLIP3Q96DZ5 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.36□□□□□ -2.03
CLIP3Q96DZ5 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 Y_RNA.116-201ENST00000363292 103 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 RNU6-1292P-201ENST00000383856 107 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 SNORD61-201ENST00000384252 73 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 RNU6-106P-201ENST00000384405 107 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 Y_RNA.495-201ENST00000384435 112 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 SNORA8-201ENST00000384574 139 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 MIR548A2-201ENST00000384956 97 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 MIR17-201ENST00000385012 84 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 RNA5SP212-201ENST00000391223 107 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 RPS15AP28-201ENST00000435088 386 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 SNORA72.7-201ENST00000516349 94 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 AC084364.2-201ENST00000546924 395 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 MIR5582-201ENST00000579697 68 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 MIR5092-201ENST00000583139 88 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 AC073413.2-201ENST00000604332 360 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 uc_338.28-201ENST00000612082 187 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 AC064859.1-201ENST00000624741 174 ntBASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.35□□□□□ -2.03
CLIP3Q96DZ5 Y_RNA.253-201ENST00000364562 112 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 Y_RNA.281-201ENST00000364774 94 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 SNORA67.4-201ENST00000384688 142 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 MIR520G-201ENST00000385064 90 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 SNORD72-201ENST00000390994 80 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 RNU11-5P-201ENST00000391216 129 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 AL359511.1-201ENST00000402970 211 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 CALM2P4-201ENST00000430810 426 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 RNA5SP24-201ENST00000516478 95 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 RNU6-504P-201ENST00000516568 104 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 Y_RNA.694-201ENST00000516677 117 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 SCARNA15-202ENST00000516881 127 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 JPX_2.1-201ENST00000614161 69 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 MIR376A2-201ENST00000636782 80 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 U6.108-201ENST00000637764 58 ntBASIC2.34□□□□□ -2.03
CLIP3Q96DZ5 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
CLIP3Q96DZ5 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.04
CLIP3Q96DZ5 RNA5SP289-201ENST00000362332 137 ntBASIC2.33□□□□□ -2.04
CLIP3Q96DZ5 RNU6-888P-201ENST00000363010 101 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 185.1 ms