Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MIR660-201ENST00000385235 97 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-763P-201ENST00000390865 106 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 RNU2-38P-201ENST00000410856 79 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-1054P-201ENST00000411293 104 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 U8.19-201ENST00000459095 133 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 snoU13.18-201ENST00000459483 104 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-322P-201ENST00000516010 103 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 SNORA70.12-201ENST00000516084 153 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 RNU2-31P-201ENST00000516954 155 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-341P-201ENST00000516973 96 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-1096P-201ENST00000517089 102 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 AC136628.3-201ENST00000521868 290 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 AC012433.1-201ENST00000588916 398 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 AC011921.3-201ENST00000605540 361 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 AL008718.3-201ENST00000610217 321 ntBASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.01□□□□□ -2.25
ZNF540Q8NDQ6 MIR335-201ENST00000362173 94 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-1272P-201ENST00000362776 107 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 SNORD114-24-201ENST00000365029 72 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 RNU1-36P-201ENST00000365130 165 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.355-201ENST00000365462 98 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-1323P-201ENST00000384025 107 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-42P-201ENST00000384165 107 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-662P-201ENST00000384253 104 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-376P-201ENST00000384731 106 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-910P-201ENST00000390844 107 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 AC063976.4-201ENST00000421971 163 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 Z98949.2-201ENST00000440996 144 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 SNORD127-201ENST00000458892 86 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 RNU7-141P-201ENST00000459304 62 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 OR9P1P-201ENST00000496431 281 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-1278P-201ENST00000516130 107 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 RNU7-115P-201ENST00000516433 55 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 SCARNA24.2-201ENST00000516968 130 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 AL357312.1-201ENST00000603879 298 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 AP003357.1-201ENST00000604497 148 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 U2.14-201ENST00000615943 113 ntBASIC1□□□□□ -2.25
ZNF540Q8NDQ6 AC134026.1-201ENST00000623249 2239 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.117-201ENST00000363294 101 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.144-201ENST00000363521 113 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.275-201ENST00000364726 110 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.341-201ENST00000365341 102 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-1080P-201ENST00000383982 107 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 MIR200A-201ENST00000384875 90 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 SNORD2.1-201ENST00000458762 69 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 AL049830.1-201ENST00000468034 425 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 COX6CP14-201ENST00000469580 174 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 SNORA27.4-201ENST00000516650 95 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-922P-201ENST00000516753 99 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 AC024405.2-202ENST00000532731 184 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 AC127455.1-201ENST00000565496 145 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 AC005357.1-201ENST00000588399 301 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 AC005972.2-201ENST00000604690 348 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 AC103810.9-201ENST00000606688 112 ntBASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.99□□□□□ -2.25
ZNF540Q8NDQ6 AL442644.1-201ENST00000454390 3105 ntBASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.14-201ENST00000362415 103 ntBASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 RNU4-41P-201ENST00000364426 143 ntBASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-740P-201ENST00000364734 105 ntBASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-463P-201ENST00000384340 107 ntBASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.539-201ENST00000384635 107 ntBASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-713P-201ENST00000384761 107 ntBASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 MIR520G-201ENST00000385064 90 ntBASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 SNORD58.1-201ENST00000391313 66 ntBASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-710P-201ENST00000410424 105 ntBASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 RPL39P39-201ENST00000455840 151 ntBASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 AC117454.1-201ENST00000491120 168 ntBASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 MIR548AY-201ENST00000617669 107 ntBASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 snoU18.1-201ENST00000629629 71 ntBASIC0.98□□□□□ -2.25
ZNF540Q8NDQ6 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 SNORA25.1-201ENST00000362326 128 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.76-201ENST00000362931 109 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-199P-201ENST00000362954 107 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.118-201ENST00000363300 101 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.253-201ENST00000364562 112 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.267-201ENST00000364679 109 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 RNU6-969P-201ENST00000383900 105 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 Y_RNA.452-201ENST00000384202 108 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 SNORA72-201ENST00000384339 132 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 MIR562-201ENST00000384894 95 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 AL451046.2-201ENST00000403074 277 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 AL603910.2-201ENST00000407268 136 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 MIR1302-6-201ENST00000408466 90 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 MIR1278-201ENST00000408753 81 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 RNU2-64P-201ENST00000411315 191 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 CALM2P4-201ENST00000430810 426 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 RPL39P28-201ENST00000465655 155 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 AL358944.1-201ENST00000528537 144 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 AP002004.2-201ENST00000531656 154 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 AC011604.1-201ENST00000545978 196 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 MIR4282-201ENST00000583613 67 ntBASIC0.97□□□□□ -2.25
ZNF540Q8NDQ6 AL591926.4-201ENST00000616895 298 ntBASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms