Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.76□□□□□ -2.29
SKA3Q8IX90 Y_RNA.61-201ENST00000362835 102 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 Y_RNA.105-201ENST00000363182 111 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 Y_RNA.136-201ENST00000363444 102 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 Y_RNA.330-201ENST00000365230 109 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 MTCO2P33-201ENST00000402100 465 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 MIR548P-201ENST00000408336 84 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 MIR1252-201ENST00000408861 65 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.76□□□□□ -2.29
SKA3Q8IX90 RNU7-90P-201ENST00000459216 62 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 PDCD5P2-201ENST00000507570 312 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 RNU6-764P-201ENST00000516396 105 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 Y_RNA.721-201ENST00000517207 102 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 MIR2681-201ENST00000581814 105 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 AC008507.4-201ENST00000585464 127 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 AC013244.2-201ENST00000603396 103 ntBASIC0.76□□□□□ -2.29
SKA3Q8IX90 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
SKA3Q8IX90 Y_RNA.138-201ENST00000363462 102 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 SNORD114-24-201ENST00000365029 72 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 SNORA22B-201ENST00000383876 138 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 MIR200A-201ENST00000384875 90 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 RNU6-763P-201ENST00000390865 106 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 SNORD115-46-201ENST00000390982 71 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 Y_RNA.581-201ENST00000391017 97 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 MIR942-201ENST00000401111 86 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 MIR1276-201ENST00000408707 83 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 MTCO1P5-201ENST00000433573 344 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 SNORD11-201ENST00000459124 84 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 MRPS35P2-201ENST00000508242 191 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 RN7SKP164-201ENST00000516138 266 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 SNORA40.15-201ENST00000516884 107 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 AP003716.2-201ENST00000528260 108 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 MIR4661-201ENST00000582720 75 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 AC008133.2-201ENST00000624540 351 ntBASIC0.75□□□□□ -2.29
SKA3Q8IX90 MIR373-201ENST00000362273 69 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 RNU6-674P-201ENST00000363831 107 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 RNU1-93P-201ENST00000364704 169 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 RNU6-290P-201ENST00000365212 101 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 Y_RNA.569-201ENST00000384749 103 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 SNORD28B-201ENST00000390993 75 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 SNORD72-201ENST00000390994 80 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 MIR1185-1-201ENST00000408598 86 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 RNU6-121P-201ENST00000410525 99 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 POLR2J4-204ENST00000418424 324 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 MTCO2P12-201ENST00000427426 682 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 SNRPGP14-201ENST00000435400 219 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.74□□□□□ -2.29
SKA3Q8IX90 Y_RNA.711-201ENST00000516993 102 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 FAM71BP1-201ENST00000604431 523 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 MIR8070-201ENST00000616510 88 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 AC015726.2-201ENST00000620112 122 ntBASIC0.74□□□□□ -2.29
SKA3Q8IX90 Y_RNA.128-201ENST00000363391 112 ntBASIC0.73□□□□□ -2.29
SKA3Q8IX90 RNU6-899P-201ENST00000363947 107 ntBASIC0.73□□□□□ -2.29
SKA3Q8IX90 SNORD114-2-201ENST00000363953 78 ntBASIC0.73□□□□□ -2.29
SKA3Q8IX90 RNU6-268P-201ENST00000364174 107 ntBASIC0.73□□□□□ -2.29
SKA3Q8IX90 Y_RNA.527-201ENST00000384573 102 ntBASIC0.73□□□□□ -2.29
SKA3Q8IX90 AL603910.2-201ENST00000407268 136 ntBASIC0.73□□□□□ -2.29
SKA3Q8IX90 AC006461.1-201ENST00000412637 326 ntBASIC0.73□□□□□ -2.29
SKA3Q8IX90 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.73□□□□□ -2.29
SKA3Q8IX90 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.73□□□□□ -2.29
SKA3Q8IX90 AC131281.1-201ENST00000522984 164 ntBASIC0.73□□□□□ -2.29
SKA3Q8IX90 AC023827.1-201ENST00000569247 97 ntBASIC0.73□□□□□ -2.29
SKA3Q8IX90 SEPT14P17-201ENST00000617978 177 ntBASIC0.73□□□□□ -2.29
SKA3Q8IX90 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.73□□□□□ -2.29
SKA3Q8IX90 AC134503.1-201ENST00000633048 54 ntBASIC0.73□□□□□ -2.29
SKA3Q8IX90 RNU6-1205P-201ENST00000363625 106 ntBASIC0.72□□□□□ -2.29
SKA3Q8IX90 Y_RNA.216-201ENST00000364205 93 ntBASIC0.72□□□□□ -2.29
SKA3Q8IX90 RNU1-36P-201ENST00000365130 165 ntBASIC0.72□□□□□ -2.29
SKA3Q8IX90 Y_RNA.380-201ENST00000365663 111 ntBASIC0.72□□□□□ -2.29
SKA3Q8IX90 RNU6-514P-201ENST00000384208 107 ntBASIC0.72□□□□□ -2.29
SKA3Q8IX90 MIR100-201ENST00000385259 80 ntBASIC0.72□□□□□ -2.29
SKA3Q8IX90 RPL21P38-201ENST00000418090 167 ntBASIC0.72□□□□□ -2.29
SKA3Q8IX90 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.72□□□□□ -2.29
SKA3Q8IX90 MIR548AR-201ENST00000582191 57 ntBASIC0.72□□□□□ -2.29
SKA3Q8IX90 AC211469.2-201ENST00000605461 205 ntBASIC0.72□□□□□ -2.29
SKA3Q8IX90 MIR4251-201ENST00000635819 61 ntBASIC0.72□□□□□ -2.29
SKA3Q8IX90 AL442644.1-201ENST00000454390 3105 ntBASIC0.72□□□□□ -2.29
SKA3Q8IX90 SNORA25.1-201ENST00000362326 128 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 RNU6-1272P-201ENST00000362776 107 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 Y_RNA.158-201ENST00000363651 101 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 SNORD114-22-201ENST00000365423 72 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 Y_RNA.455-201ENST00000384230 98 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 MIR570-201ENST00000384917 97 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 SNORA53-201ENST00000391141 249 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 RPS3AP1-201ENST00000413190 320 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.71□□□□□ -2.3
SKA3Q8IX90 RNU6-351P-201ENST00000516097 100 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 RNU6-1007P-201ENST00000516586 107 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 AC113195.1-201ENST00000579952 141 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 AC131055.1-201ENST00000584626 316 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 AL355297.3-201ENST00000604082 446 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 AC037487.3-201ENST00000606668 112 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.71□□□□□ -2.3
SKA3Q8IX90 MIR6504-201ENST00000613520 61 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 Pinc.1-201ENST00000616452 154 ntBASIC0.71□□□□□ -2.3
SKA3Q8IX90 Y_RNA.210-201ENST00000364161 110 ntBASIC0.7□□□□□ -2.3
SKA3Q8IX90 RNU6-806P-201ENST00000365147 105 ntBASIC0.7□□□□□ -2.3
SKA3Q8IX90 Y_RNA.541-201ENST00000384640 113 ntBASIC0.7□□□□□ -2.3
SKA3Q8IX90 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 698.7 ms