Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MTCO1P20-201ENST00000425366 358 ntBASIC-0.82□□□□□ -2.54
USP54Q70EL1 MTND3P16-201ENST00000452205 344 ntBASIC-0.82□□□□□ -2.54
USP54Q70EL1 RNU4ATAC8P-201ENST00000516196 109 ntBASIC-0.82□□□□□ -2.54
USP54Q70EL1 MIR4273-201ENST00000582824 84 ntBASIC-0.82□□□□□ -2.54
USP54Q70EL1 AC134878.1-201ENST00000619901 243 ntBASIC-0.82□□□□□ -2.54
USP54Q70EL1 SNORA40.4-201ENST00000390971 128 ntBASIC-0.83□□□□□ -2.54
USP54Q70EL1 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC-0.83□□□□□ -2.54
USP54Q70EL1 EIF1P2-201ENST00000428233 350 ntBASIC-0.83□□□□□ -2.54
USP54Q70EL1 MTND2P14-201ENST00000482139 351 ntBASIC-0.83□□□□□ -2.54
USP54Q70EL1 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC-0.83□□□□□ -2.54
USP54Q70EL1 AC019193.3-201ENST00000609144 554 ntBASIC-0.83□□□□□ -2.54
USP54Q70EL1 TUG1_4.1-201ENST00000619464 181 ntBASIC-0.83□□□□□ -2.54
USP54Q70EL1 AL162376.1-201ENST00000624117 175 ntBASIC-0.83□□□□□ -2.54
USP54Q70EL1 RNU4-32P-201ENST00000363404 141 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 SNORD113-7-201ENST00000363762 77 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 Y_RNA.361-201ENST00000365515 120 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 Y_RNA.405-201ENST00000383979 100 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 Y_RNA.451-201ENST00000384200 100 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 Y_RNA.524-201ENST00000384564 100 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 Y_RNA.561-201ENST00000384694 100 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 MIR563-201ENST00000385080 79 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 RNU4-83P-201ENST00000410863 133 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 MTND2P18-201ENST00000419962 1030 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 CYCSP46-201ENST00000423569 204 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-0.84□□□□□ -2.54
USP54Q70EL1 AC099654.12-201ENST00000639868 649 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 RNU6-1309P-201ENST00000363305 108 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 RNU6-726P-201ENST00000364680 107 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 RNY3-201ENST00000365484 102 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 RNU6-767P-201ENST00000384132 107 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 Y_RNA.494-201ENST00000384432 111 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 MIR517A-201ENST00000385001 87 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 DLGAP5P1-201ENST00000430307 464 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 AL138752.1-201ENST00000452964 351 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 Y_RNA.706-201ENST00000516933 99 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 MIR4752-201ENST00000579672 72 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 MIR4491-201ENST00000581087 68 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 MIR4677-201ENST00000584153 80 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 Z97988.1-201ENST00000637697 135 ntBASIC-0.84□□□□□ -2.54
USP54Q70EL1 RNU6-403P-201ENST00000363163 104 ntBASIC-0.85□□□□□ -2.55
USP54Q70EL1 RNU6-254P-201ENST00000363377 107 ntBASIC-0.85□□□□□ -2.55
USP54Q70EL1 RNU6-1322P-201ENST00000364309 107 ntBASIC-0.85□□□□□ -2.55
USP54Q70EL1 RNU6-128P-201ENST00000383976 107 ntBASIC-0.85□□□□□ -2.55
USP54Q70EL1 RNU4-30P-201ENST00000410245 143 ntBASIC-0.85□□□□□ -2.55
USP54Q70EL1 RNU6-625P-201ENST00000459412 107 ntBASIC-0.85□□□□□ -2.55
USP54Q70EL1 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC-0.85□□□□□ -2.55
USP54Q70EL1 RNA5SP401-201ENST00000515920 127 ntBASIC-0.85□□□□□ -2.55
USP54Q70EL1 RNU6-504P-201ENST00000516568 104 ntBASIC-0.85□□□□□ -2.55
USP54Q70EL1 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC-0.85□□□□□ -2.55
USP54Q70EL1 AC090616.2-202ENST00000584248 222 ntBASIC-0.85□□□□□ -2.55
USP54Q70EL1 AP001330.5-201ENST00000607176 411 ntBASIC-0.85□□□□□ -2.55
USP54Q70EL1 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC-0.85□□□□□ -2.55
USP54Q70EL1 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-0.85□□□□□ -2.55
USP54Q70EL1 RNU6-38P-201ENST00000384085 107 ntBASIC-0.86□□□□□ -2.55
USP54Q70EL1 RNU6-480P-201ENST00000384332 107 ntBASIC-0.86□□□□□ -2.55
USP54Q70EL1 SNORA40.5-201ENST00000391061 128 ntBASIC-0.86□□□□□ -2.55
USP54Q70EL1 RNU6-1199P-201ENST00000411249 104 ntBASIC-0.86□□□□□ -2.55
USP54Q70EL1 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC-0.86□□□□□ -2.55
USP54Q70EL1 LRRC34P1-201ENST00000542742 915 ntBASIC-0.86□□□□□ -2.55
USP54Q70EL1 MIR5188-201ENST00000583467 113 ntBASIC-0.86□□□□□ -2.55
USP54Q70EL1 AC004467.1-201ENST00000615678 330 ntBASIC-0.86□□□□□ -2.55
USP54Q70EL1 AP002371.2-201ENST00000624450 503 ntBASIC-0.86□□□□□ -2.55
USP54Q70EL1 MIR30D-201ENST00000362283 70 ntBASIC-0.87□□□□□ -2.55
USP54Q70EL1 Y_RNA.203-201ENST00000364106 102 ntBASIC-0.87□□□□□ -2.55
USP54Q70EL1 USP9YP16-201ENST00000430287 407 ntBASIC-0.87□□□□□ -2.55
USP54Q70EL1 AC109327.2-201ENST00000448339 378 ntBASIC-0.87□□□□□ -2.55
USP54Q70EL1 USP9YP23-201ENST00000455085 407 ntBASIC-0.87□□□□□ -2.55
USP54Q70EL1 MTND1P11-201ENST00000456661 876 ntBASIC-0.87□□□□□ -2.55
USP54Q70EL1 MIR6082-201ENST00000613604 109 ntBASIC-0.87□□□□□ -2.55
USP54Q70EL1 AC084368.1-201ENST00000620935 65 ntBASIC-0.87□□□□□ -2.55
USP54Q70EL1 RNU6-192P-201ENST00000391253 100 ntBASIC-0.88□□□□□ -2.55
USP54Q70EL1 RNU7-116P-201ENST00000516940 62 ntBASIC-0.88□□□□□ -2.55
USP54Q70EL1 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC-0.88□□□□□ -2.55
USP54Q70EL1 MTND5P34-201ENST00000568888 325 ntBASIC-0.88□□□□□ -2.55
USP54Q70EL1 MIR655-201ENST00000362159 97 ntBASIC-0.88□□□□□ -2.55
USP54Q70EL1 RNU6-1214P-201ENST00000363650 109 ntBASIC-0.88□□□□□ -2.55
USP54Q70EL1 Y_RNA.172-201ENST00000363765 102 ntBASIC-0.88□□□□□ -2.55
USP54Q70EL1 RNU6-1103P-201ENST00000384150 107 ntBASIC-0.88□□□□□ -2.55
USP54Q70EL1 MIR587-201ENST00000384845 96 ntBASIC-0.88□□□□□ -2.55
USP54Q70EL1 MIR122-201ENST00000385044 85 ntBASIC-0.88□□□□□ -2.55
USP54Q70EL1 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC-0.88□□□□□ -2.55
USP54Q70EL1 AL031667.1-201ENST00000440222 725 ntBASIC-0.88□□□□□ -2.55
USP54Q70EL1 MIR2681-201ENST00000581814 105 ntBASIC-0.88□□□□□ -2.55
USP54Q70EL1 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC-0.88□□□□□ -2.55
USP54Q70EL1 Y_RNA.49-201ENST00000362714 112 ntBASIC-0.89□□□□□ -2.55
USP54Q70EL1 RNU6-595P-201ENST00000363944 107 ntBASIC-0.89□□□□□ -2.55
USP54Q70EL1 SNORA25.7-201ENST00000364375 127 ntBASIC-0.89□□□□□ -2.55
USP54Q70EL1 RNU4-75P-201ENST00000364621 146 ntBASIC-0.89□□□□□ -2.55
USP54Q70EL1 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.89□□□□□ -2.55
USP54Q70EL1 RNU6-601P-201ENST00000384540 107 ntBASIC-0.89□□□□□ -2.55
USP54Q70EL1 RNU6-1158P-201ENST00000391167 107 ntBASIC-0.89□□□□□ -2.55
USP54Q70EL1 ERLEC1P1-201ENST00000433806 578 ntBASIC-0.89□□□□□ -2.55
USP54Q70EL1 RNU2-11P-201ENST00000459191 187 ntBASIC-0.89□□□□□ -2.55
USP54Q70EL1 RNU6-1208P-201ENST00000459588 107 ntBASIC-0.89□□□□□ -2.55
USP54Q70EL1 RNU6-475P-201ENST00000516073 104 ntBASIC-0.89□□□□□ -2.55
USP54Q70EL1 MIR3165-201ENST00000579874 75 ntBASIC-0.89□□□□□ -2.55
USP54Q70EL1 AC105081.1-201ENST00000617727 106 ntBASIC-0.89□□□□□ -2.55
USP54Q70EL1 RNU4-28P-201ENST00000364739 141 ntBASIC-0.9□□□□□ -2.55
USP54Q70EL1 Y_RNA.358-201ENST00000365491 99 ntBASIC-0.9□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 227.1 ms