Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 RNU6-945P-201ENST00000383947 107 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 Y_RNA.505-201ENST00000384489 102 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 MIR570-201ENST00000384917 97 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 U8.17-201ENST00000391292 132 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 MIR936-201ENST00000401264 98 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 AC138393.2-201ENST00000414742 246 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 AC114737.2-201ENST00000421583 173 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 HMGN1P10-201ENST00000474557 553 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 RNU6-229P-201ENST00000516614 102 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 RNU7-110P-201ENST00000516891 62 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 MIR4300-201ENST00000581016 96 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 MIR2681-201ENST00000581814 105 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 AC012433.1-201ENST00000588916 398 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
TRIM40Q6P9F5 MIR1-1-201ENST00000362147 71 ntBASIC0.44□□□□□ -2.34
TRIM40Q6P9F5 Y_RNA.142-201ENST00000363491 102 ntBASIC0.44□□□□□ -2.34
TRIM40Q6P9F5 Y_RNA.384-201ENST00000383909 102 ntBASIC0.44□□□□□ -2.34
TRIM40Q6P9F5 Y_RNA.458-201ENST00000384240 102 ntBASIC0.44□□□□□ -2.34
TRIM40Q6P9F5 SNORA51.10-201ENST00000384418 136 ntBASIC0.44□□□□□ -2.34
TRIM40Q6P9F5 Y_RNA.537-201ENST00000384626 109 ntBASIC0.44□□□□□ -2.34
TRIM40Q6P9F5 MTCO2P33-201ENST00000402100 465 ntBASIC0.44□□□□□ -2.34
TRIM40Q6P9F5 AC104695.3-201ENST00000604052 296 ntBASIC0.44□□□□□ -2.34
TRIM40Q6P9F5 AL080274.1-201ENST00000605565 220 ntBASIC0.44□□□□□ -2.34
TRIM40Q6P9F5 AL121655.1-201ENST00000605811 308 ntBASIC0.44□□□□□ -2.34
TRIM40Q6P9F5 AL138825.1-201ENST00000618587 192 ntBASIC0.44□□□□□ -2.34
TRIM40Q6P9F5 PVT1_3.1-201ENST00000620853 95 ntBASIC0.44□□□□□ -2.34
TRIM40Q6P9F5 AC099654.14-201ENST00000638599 341 ntBASIC0.44□□□□□ -2.34
TRIM40Q6P9F5 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.43□□□□□ -2.34
TRIM40Q6P9F5 RNU7-152P-201ENST00000458982 64 ntBASIC0.43□□□□□ -2.34
TRIM40Q6P9F5 RNU6-437P-201ENST00000459408 95 ntBASIC0.43□□□□□ -2.34
TRIM40Q6P9F5 MIR548AO-201ENST00000579992 96 ntBASIC0.43□□□□□ -2.34
TRIM40Q6P9F5 MIR3145-201ENST00000580727 82 ntBASIC0.43□□□□□ -2.34
TRIM40Q6P9F5 AC243829.3-201ENST00000622177 108 ntBASIC0.43□□□□□ -2.34
TRIM40Q6P9F5 MIR1302-1-201ENST00000637932 143 ntBASIC0.43□□□□□ -2.34
TRIM40Q6P9F5 MIR377-201ENST00000362145 69 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 RNU6-1115P-201ENST00000362490 106 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 RNU6-674P-201ENST00000363831 107 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 SNORD63-201ENST00000384262 68 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 Y_RNA.496-201ENST00000384444 101 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 Y_RNA.551-201ENST00000384661 102 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 MT-TN-201ENST00000387400 73 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 SNORA36B-201ENST00000410438 131 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 RNA5SP222-201ENST00000411039 105 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 RNU6-496P-201ENST00000516145 99 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 RNU6-1007P-201ENST00000516586 107 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 RNU7-181P-201ENST00000517234 74 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 RPL23AP91-201ENST00000569211 455 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 MIR4711-201ENST00000578274 70 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 RPS29P30-201ENST00000600975 111 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 AC006441.5-201ENST00000612680 209 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 AC084781.2-201ENST00000615568 161 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 AC015726.2-201ENST00000620112 122 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 MIR5087-201ENST00000635826 76 ntBASIC0.42□□□□□ -2.34
TRIM40Q6P9F5 Y_RNA.39-201ENST00000362620 98 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 Y_RNA.187-201ENST00000363918 113 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 Y_RNA.242-201ENST00000364473 110 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 SNORA1.2-201ENST00000365189 134 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 Y_RNA.376-201ENST00000365638 108 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 RNU6-21P-201ENST00000384710 107 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 RNU6-1237P-201ENST00000384777 107 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 SNORD72-201ENST00000390994 80 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 RNU4-30P-201ENST00000410245 143 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 RNA5SP193-201ENST00000410353 107 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 RNU7-141P-201ENST00000459304 62 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 SNORA40.14-201ENST00000516543 86 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 AC092447.9-201ENST00000603395 144 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 Z83818.1-201ENST00000603584 150 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 MIR4791-201ENST00000607666 84 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 AL132765.2-201ENST00000610812 351 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 MTND1P7-201ENST00000632801 297 ntBASIC0.41□□□□□ -2.34
TRIM40Q6P9F5 RNU6-369P-201ENST00000362515 102 ntBASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 SNORA36.2-201ENST00000384004 127 ntBASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 Y_RNA.439-201ENST00000384119 94 ntBASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 RNU6-342P-201ENST00000384521 104 ntBASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 AL603910.2-201ENST00000407268 136 ntBASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 MIR1278-201ENST00000408753 81 ntBASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 AL160004.2-201ENST00000432935 350 ntBASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 RBMX2P4-201ENST00000441256 376 ntBASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 SNORD11-201ENST00000459124 84 ntBASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 SCARNA8-201ENST00000515924 131 ntBASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 RNU4-57P-201ENST00000515980 135 ntBASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 RNU4-77P-201ENST00000516692 156 ntBASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 AC104985.2-201ENST00000620598 500 ntBASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 AL606534.2-204ENST00000635008 178 ntBASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.4□□□□□ -2.35
TRIM40Q6P9F5 RNU6-580P-201ENST00000365159 107 ntBASIC0.39□□□□□ -2.35
TRIM40Q6P9F5 RNU1-115P-201ENST00000365329 160 ntBASIC0.39□□□□□ -2.35
TRIM40Q6P9F5 SNORA72.4-201ENST00000384174 132 ntBASIC0.39□□□□□ -2.35
TRIM40Q6P9F5 RNU6-937P-201ENST00000384325 106 ntBASIC0.39□□□□□ -2.35
TRIM40Q6P9F5 RNU6-847P-201ENST00000411115 108 ntBASIC0.39□□□□□ -2.35
TRIM40Q6P9F5 RNU6-177P-201ENST00000411257 104 ntBASIC0.39□□□□□ -2.35
TRIM40Q6P9F5 MTND1P14-201ENST00000427400 950 ntBASIC0.39□□□□□ -2.35
TRIM40Q6P9F5 U8.20-201ENST00000459445 131 ntBASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms