Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RNU6-107P-201ENST00000516643 102 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC-0.93□□□□□ -2.56
USF3Q68DE3 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC-0.93□□□□□ -2.56
USF3Q68DE3 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC-0.93□□□□□ -2.56
USF3Q68DE3 AL158050.2-201ENST00000605336 568 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 RNU6-1192P-201ENST00000612197 107 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 RNU6-489P-201ENST00000618289 107 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 RNU6-136P-201ENST00000384663 107 ntBASIC-0.94□□□□□ -2.56
USF3Q68DE3 SNORD41.1-201ENST00000391000 69 ntBASIC-0.94□□□□□ -2.56
USF3Q68DE3 AL590002.1-201ENST00000406554 418 ntBASIC-0.94□□□□□ -2.56
USF3Q68DE3 Z82188.1-201ENST00000436709 154 ntBASIC-0.94□□□□□ -2.56
USF3Q68DE3 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC-0.94□□□□□ -2.56
USF3Q68DE3 MTND4LP18-201ENST00000526864 291 ntBASIC-0.94□□□□□ -2.56
USF3Q68DE3 DEFB131E-201ENST00000532329 154 ntBASIC-0.94□□□□□ -2.56
USF3Q68DE3 U2.17-201ENST00000611454 95 ntBASIC-0.94□□□□□ -2.56
USF3Q68DE3 JPX_2.1-201ENST00000614161 69 ntBASIC-0.94□□□□□ -2.56
USF3Q68DE3 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC-0.95□□□□□ -2.56
USF3Q68DE3 RNU6-403P-201ENST00000363163 104 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 SNORD14E-201ENST00000364009 85 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 RNU6-454P-201ENST00000364292 107 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 RNU6-767P-201ENST00000384132 107 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 RNU6-901P-201ENST00000384593 106 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 SNORD64-201ENST00000386683 67 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 Y_RNA.588-201ENST00000391254 102 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 RNU6-325P-201ENST00000411132 105 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 AC096949.1-201ENST00000412047 152 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 SNORD18.2-201ENST00000459604 70 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 RNU6-1337P-201ENST00000516525 95 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 MRPS18CP4-201ENST00000535821 231 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 MTND1P24-201ENST00000552175 861 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 MIR3941-201ENST00000582572 103 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 AC126544.2-201ENST00000625174 749 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 U6.115-201ENST00000636045 103 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 RNU6-1127P-201ENST00000384580 107 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 RNU6-757P-201ENST00000410334 100 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 RNU5E-9P-201ENST00000411164 104 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC-0.95□□□□□ -2.56
USF3Q68DE3 AC236972.2-201ENST00000434979 310 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 AL031667.1-201ENST00000440222 725 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 AL500527.2-201ENST00000454105 95 ntBASIC-0.95□□□□□ -2.56
USF3Q68DE3 Y_RNA.319-201ENST00000365138 92 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 MIR450B-201ENST00000401182 78 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 UBE2D3P4-201ENST00000441973 436 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 AC022137.1-201ENST00000483735 151 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 SCOCP1-201ENST00000554676 349 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 AC009878.1-201ENST00000621819 340 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 AC127459.3-201ENST00000624328 466 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 AC099654.13-201ENST00000639774 207 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 Y_RNA.86-201ENST00000363020 111 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 Y_RNA.146-201ENST00000363549 102 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 RNU6-517P-201ENST00000384362 110 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 RNU2-29P-201ENST00000410423 189 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC-0.96□□□□□ -2.56
USF3Q68DE3 ERLEC1P1-201ENST00000433806 578 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 MTATP6P26-201ENST00000445926 662 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 SNORA25.10-201ENST00000515926 124 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 AC087752.4-201ENST00000605911 462 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 AL133255.1-201ENST00000606374 441 ntBASIC-0.96□□□□□ -2.56
USF3Q68DE3 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.97□□□□□ -2.56
USF3Q68DE3 Y_RNA.38-201ENST00000362617 102 ntBASIC-0.97□□□□□ -2.56
USF3Q68DE3 Y_RNA.293-201ENST00000364908 93 ntBASIC-0.97□□□□□ -2.56
USF3Q68DE3 MIR9-2-201ENST00000384838 87 ntBASIC-0.97□□□□□ -2.56
USF3Q68DE3 MIR517B-201ENST00000385102 67 ntBASIC-0.97□□□□□ -2.56
USF3Q68DE3 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-0.97□□□□□ -2.56
USF3Q68DE3 AC112204.1-201ENST00000502591 103 ntBASIC-0.97□□□□□ -2.56
USF3Q68DE3 snoU83B.1-201ENST00000517136 88 ntBASIC-0.97□□□□□ -2.56
USF3Q68DE3 Y_RNA.243-201ENST00000364481 109 ntBASIC-0.97□□□□□ -2.57
USF3Q68DE3 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.97□□□□□ -2.57
USF3Q68DE3 RNU6-413P-201ENST00000384115 107 ntBASIC-0.97□□□□□ -2.57
USF3Q68DE3 RNU6-809P-201ENST00000384461 107 ntBASIC-0.97□□□□□ -2.57
USF3Q68DE3 RNU4-55P-201ENST00000410731 137 ntBASIC-0.97□□□□□ -2.57
USF3Q68DE3 USP9YP23-201ENST00000455085 407 ntBASIC-0.97□□□□□ -2.57
USF3Q68DE3 GMFBP1-201ENST00000467831 427 ntBASIC-0.97□□□□□ -2.57
USF3Q68DE3 RNU6-1220P-201ENST00000517126 108 ntBASIC-0.97□□□□□ -2.57
USF3Q68DE3 MIR4423-201ENST00000580922 80 ntBASIC-0.97□□□□□ -2.57
USF3Q68DE3 uc_338.10-201ENST00000621872 182 ntBASIC-0.97□□□□□ -2.57
USF3Q68DE3 Y_RNA.150-201ENST00000363562 102 ntBASIC-0.98□□□□□ -2.57
USF3Q68DE3 SNORD116.1-201ENST00000365628 92 ntBASIC-0.98□□□□□ -2.57
USF3Q68DE3 MIR181B2-201ENST00000385004 89 ntBASIC-0.98□□□□□ -2.57
USF3Q68DE3 SCARNA18B-201ENST00000458806 135 ntBASIC-0.98□□□□□ -2.57
USF3Q68DE3 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC-0.98□□□□□ -2.57
USF3Q68DE3 MIR4775-201ENST00000581168 75 ntBASIC-0.98□□□□□ -2.57
USF3Q68DE3 AC005972.2-201ENST00000604690 348 ntBASIC-0.98□□□□□ -2.57
USF3Q68DE3 AC080013.3-201ENST00000606839 578 ntBASIC-0.98□□□□□ -2.57
USF3Q68DE3 AL133215.3-201ENST00000609801 448 ntBASIC-0.98□□□□□ -2.57
USF3Q68DE3 HULC.1-201ENST00000612720 240 ntBASIC-0.98□□□□□ -2.57
USF3Q68DE3 SNORD115-34-201ENST00000362441 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-12-201ENST00000362583 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-29-201ENST00000362834 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-9-201ENST00000362912 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-21-201ENST00000362963 81 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-14-201ENST00000363090 81 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-13-201ENST00000363358 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-11-201ENST00000363616 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-5-201ENST00000363633 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-39-201ENST00000363694 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-4-201ENST00000363810 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-16-201ENST00000363887 82 ntBASIC-0.99□□□□□ -2.57
USF3Q68DE3 SNORD115-6-201ENST00000363942 82 ntBASIC-0.99□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms