Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.32□□□□□ -2.2
COL4A4P53420 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.32□□□□□ -2.2
COL4A4P53420 SNORA70.12-201ENST00000516084 153 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 uc_338.14-201ENST00000613162 166 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 MIR3658-201ENST00000636291 56 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
COL4A4P53420 SNORA18.2-201ENST00000383865 132 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 RNU6-203P-201ENST00000384038 104 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 Y_RNA.525-201ENST00000384570 113 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 MIR15B-201ENST00000385045 98 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 MIR548B-201ENST00000385247 97 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.32□□□□□ -2.2
COL4A4P53420 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
COL4A4P53420 AL365496.1-201ENST00000426885 215 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 HSPE1P21-201ENST00000438283 308 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 AC004386.2-201ENST00000441858 148 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 AC245047.8-201ENST00000456455 284 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 RPL36AP48-201ENST00000485521 314 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 AC107027.2-201ENST00000512197 115 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 RN7SKP179-201ENST00000516126 217 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 RNU6-659P-201ENST00000516454 104 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 MIR514B-201ENST00000516774 80 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 RNU6-928P-201ENST00000516876 104 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 MIR1273G-201ENST00000577677 100 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 AC108081.1-201ENST00000604358 221 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 AC005972.2-201ENST00000604690 348 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 RPL17P51-201ENST00000605218 238 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 AL627230.5-201ENST00000619807 58 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 AC110079.1-202ENST00000635213 138 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 snoU2_19.1-201ENST00000362361 80 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 RNU6-1298P-201ENST00000362456 101 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 RNU6-1010P-201ENST00000362757 107 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 SNORD116-14-201ENST00000383894 92 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 RNU6-969P-201ENST00000383900 105 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 SNORD116-17-201ENST00000383929 92 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 RNU6-1056P-201ENST00000383996 107 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 SNORD14D-201ENST00000384390 87 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 SNORD116-15-201ENST00000384445 92 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 SNORD116-19-201ENST00000384729 92 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 MIR193B-201ENST00000384907 83 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 MIR526A2-201ENST00000390198 65 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 MIR758-201ENST00000390227 88 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 AL133475.1-201ENST00000404414 305 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 SNORA79-201ENST00000408376 140 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.31□□□□□ -2.2
COL4A4P53420 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.31□□□□□ -2.2
COL4A4P53420 AC117454.1-201ENST00000491120 168 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 RPS27P26-201ENST00000494583 239 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 Y_RNA.709-201ENST00000516952 92 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 AC090049.2-201ENST00000550377 109 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 AC133485.4-201ENST00000561835 220 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 AC138907.4-201ENST00000570107 226 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 MIR4679-2-201ENST00000578358 77 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 DEFB117-201ENST00000602356 141 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.31□□□□□ -2.2
COL4A4P53420 AC096720.1-201ENST00000604441 183 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 AP003357.1-201ENST00000604497 148 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 AL034555.1-201ENST00000604816 211 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 AL449363.1-201ENST00000617815 186 ntBASIC1.31□□□□□ -2.2
COL4A4P53420 Y_RNA.43-201ENST00000362670 111 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 RNU6-1205P-201ENST00000363625 106 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 RNU6-674P-201ENST00000363831 107 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 RNU6-407P-201ENST00000365280 104 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 RNU6-1144P-201ENST00000384247 104 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 RNU6-429P-201ENST00000384582 108 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
COL4A4P53420 SNORA40.5-201ENST00000391061 128 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 Y_RNA.587-201ENST00000391210 103 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 AL355796.1-201ENST00000406706 323 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 SNORA36B-201ENST00000410438 131 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 RNU4-43P-201ENST00000410628 137 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.3□□□□□ -2.2
COL4A4P53420 RNU6-1337P-201ENST00000516525 95 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 RNA5SP121-201ENST00000516537 101 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 RNA5SP330-201ENST00000517096 96 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 RNU1-104P-201ENST00000517280 175 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 AC091152.3-201ENST00000604227 325 ntBASIC1.3□□□□□ -2.2
COL4A4P53420 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
COL4A4P53420 Y_RNA.294-201ENST00000364916 102 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 RNU6-484P-201ENST00000384016 107 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 MIR586-201ENST00000385035 97 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 RNU6-750P-201ENST00000390946 107 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 Y_RNA.584-201ENST00000391090 114 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 RNY4P18-201ENST00000391107 89 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 RNU6-460P-201ENST00000391158 108 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 U6atac.2-201ENST00000408644 118 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 AC006461.1-201ENST00000412637 326 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.29□□□□□ -2.2
COL4A4P53420 AC010099.1-201ENST00000455434 375 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 RNU7-57P-201ENST00000459540 60 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 RNA5SP20-201ENST00000515976 84 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 Y_RNA.692-201ENST00000516627 105 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 AC105245.1-201ENST00000581934 244 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 Pinc.1-201ENST00000616452 154 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 U3.8-201ENST00000363675 217 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 SNORD45.3-201ENST00000363836 72 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 RNU6-309P-201ENST00000364573 106 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 RNU6-643P-201ENST00000384018 107 ntBASIC1.29□□□□□ -2.2
COL4A4P53420 SNORA20B-201ENST00000384220 132 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms